Browse Element(s) Details


OsAffx.20940.1.S1_at

Description gb:XM_354218.1
DB_XREF= gi:35189869
TID=OsAffx.20940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g294701/11mannitol dehydrogenase, putative, expressed
LOC_Os10g335001/11hypothetical protein
LOC_Os04g022301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g071601/11hypothetical protein
LOC_Os12g163101/11Transposable element protein, putative, Retrotrans_gag
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29430OsAffx.30588.1.S1_at11/1110+14960950..14963552hypothetical protein
LOC_Os10g29440OsAffx.18445.1.S1_at11/1110+14964658..14965809BTB/POZ domain containing protein, expressed
LOC_Os10g29450OsAffx.30795.1.S1_at11/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.1.S1_x_at10/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.3.S1_at4/1110+14971269..14971820hypothetical protein
LOC_Os10g29460OsAffx.30589.1.S1_at11/1110+14973201..14973872MATH domain containing protein
LOC_Os10g29470Os.7496.1.S1_a_at11/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29470OsAffx.20940.1.S1_at1/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29502Os.46514.1.S1_at10/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_x_at6/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_at1/1110+14997293..15000942expressed protein
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009617biological_processresponse to bacteria
GO:0009626biological_processhypersensitive response
GO:0018456molecular_functionaryl-alcohol dehydrogenase activity
GO:0046029molecular_functionmannitol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20940.1.S1_at--568--9472Chr07:8420869..8420893 (25 bp)
TCTGTGTACCGGCACCTATGAGGAA
NONE
OsAffx.20940.1.S1_at--423--3371NONE
CACCTCGGCGCAGAAGTATTCCTGT
NONE
OsAffx.20940.1.S1_at--613--83923Chr12:11649311..11649428 (25 bp)
GGCGCAGAAGTATTCCTGTCAAACT
NONE
OsAffx.20940.1.S1_at--780--7691Chr07:8418438..8418462 (25 bp)
GGGTCCATTTACATAACTGGCTATG
NONE
OsAffx.20940.1.S1_at--321--9391Chr07:8412838..8412862 (25 bp)
TCGTGTCCGAAAATCCTTTTCAACA
NONE
OsAffx.20940.1.S1_at--654--554Chr09:20107862..20107881 (20 bp)
ATCCTTTTCAACATCCGGTCAAACG
NONE
OsAffx.20940.1.S1_at--674--3573Chr10:14978357..14978839 (25 bp)
CATTTTACCAACTAAACAGGCTCTA
LOC_Os10g29470
OsAffx.20940.1.S1_at--890--10471Chr07:8411434..8411458 (25 bp)
TTACAGTGCAAGAGCCTATGGCCAT
NONE
OsAffx.20940.1.S1_at--902--3691Chr07:8411419..8411443 (25 bp)
CTATGGCCATGTACAACGCGTTGCT
NONE
OsAffx.20940.1.S1_at--820--1831Chr07:8411404..8411428 (25 bp)
ACGCGTTGCTGGTTTCACTGGTGGA
NONE
OsAffx.20940.1.S1_at--119--9313Chr10:17324919..17324939 (21 bp)
TCCCAGTTCGTAACCCCTCTATAGT
LOC_Os10g33500
Target Sequence 
TCTGTGTACCGGCACCTATGAGGAATATGGGAAAAAAAGAAAAAAAAGAAAAGCATATATGGAAAAAAAAGCCTCCACCA
CCACCGCAACCGCCGTTGCTGGATCCAGCGGCCGCCACCAGCCGCCTCCTCGTCCACGCCAGTCTCCACCACCACCGCCG
CCGCCACCACCTCGGCGCAGAAGTATTCCTGTCAAACTCTTCTCGACCAAGGAGCAACTTCTTTTTGAGTTGTCTGCTCC
TCGAGGCGAATTCTATGAGCCACCTCCTTCATCGGGGTCCATTTACATAACTGGCTATGAAATTCGCCCCGAACTAATTA
GTATGGTGAGTTATGAAATTAGTTTTTTCATTCGTGTCCGAAAATCCTTTTCAACATCCGGTCAAACGTCCGATGTGACA
AAAAAAATTTTCATTTTACCAACTAAACAGGCTCTAAAATATGAACTAAATACAGCTAAGTTAAAATTTACAGTGCAAGA
GCCTATGGCCATGTACAACGCGTTGCTGGTTTCACTGGTGGAGAAGAAGTTTTTACTCCCAGTTCGTAACCCCTCTATAG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis