Browse Element(s) Details


Os.7496.1.S1_a_at

Description gb:AK069040.1
DB_XREF= gi:32979064
TID=Os.7496.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cinnamyl alcohol dehydrogenase (OSJNBa0073D04.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003B20, full insert sequence.
FL= gb:AK069040.1 gb:AK099176.1 gb:AK104047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2947011/11mannitol dehydrogenase, putative, expressed
LOC_Os08g169101/11mannitol dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29430OsAffx.30588.1.S1_at11/1110+14960950..14963552hypothetical protein
LOC_Os10g29440OsAffx.18445.1.S1_at11/1110+14964658..14965809BTB/POZ domain containing protein, expressed
LOC_Os10g29450OsAffx.30795.1.S1_at11/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.1.S1_x_at10/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.3.S1_at4/1110+14971269..14971820hypothetical protein
LOC_Os10g29460OsAffx.30589.1.S1_at11/1110+14973201..14973872MATH domain containing protein
LOC_Os10g29470Os.7496.1.S1_a_at11/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29470OsAffx.20940.1.S1_at1/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29502Os.46514.1.S1_at10/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_x_at6/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_at1/1110+14997293..15000942expressed protein
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009617biological_processresponse to bacteria
GO:0009626biological_processhypersensitive response
GO:0018456molecular_functionaryl-alcohol dehydrogenase activity
GO:0046029molecular_functionmannitol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7496.1.S1_a_at--1061--1912Chr10:14975109..14975133 (25 bp)
ACGGGAAGATGATCCTCGTCGGCCT
LOC_Os10g29470
Os.7496.1.S1_a_at--777--9211Chr10:14974962..14975070 (25 bp)
TCCACGGGAACAGGACTCTGGCAGG
LOC_Os10g29470
Os.7496.1.S1_a_at--770--3951Chr10:14974809..14974833 (25 bp)
CGGATGTCAGGTATCGCTTCGTCAT
LOC_Os10g29470
Os.7496.1.S1_a_at--242--4471Chr10:14974737..14974761 (25 bp)
GCCTGCAAACTATTCGTGTGGTCTG
LOC_Os10g29470
Os.7496.1.S1_a_at--196--5611Chr10:14974702..14974726 (25 bp)
GAAATTGTTCATGGTACGTACACGA
LOC_Os10g29470
Os.7496.1.S1_a_at--513--1251Chr10:14974672..14974696 (25 bp)
AGATTGTGGCGTGTCATGGCGTATA
LOC_Os10g29470
Os.7496.1.S1_a_at--705--8371Chr10:14974655..14974679 (25 bp)
GGCGTATAGGAATGAACCCGATCGA
LOC_Os10g29470
Os.7496.1.S1_a_at--838--7851Chr10:14974617..14974641 (25 bp)
GGTAGTCTGATGCTAGTCAGCTCAG
LOC_Os10g29470
Os.7496.1.S1_a_at--272--7111Chr10:14974602..14974626 (25 bp)
GTCAGCTCAGTGTTTGACTGTTTGC
LOC_Os10g29470
Os.7496.1.S1_a_at--656--5731Chr10:14974587..14974611 (25 bp)
GACTGTTTGCATTTACGGATTGAAA
LOC_Os10g29470
Os.7496.1.S1_a_at--966--10751Chr10:14974562..14974586 (25 bp)
TTGAGCTTTGTGTGGCCTAAGTTTT
LOC_Os10g29470
Target Sequence 
ACGGGAAGATGATCCTCGTCGGCCTCCCGGAGAATCCCCTGGAGGTCCCTCCCTTCTCTCTCGTCCACGGGAACAGGACT
CTGGCAGGGAGCAACATCGGCGGCATGGCGGACACGCAGGAGATGATCGAGCTGGCGGCGAAGCANGGCGTGACGGCGGA
CATCGAGGTGATCGGCGCCGACGACGTGAACACGGCCATGGAGCGCCTCGCCAAGGCGGATGTCAGGTATCGCTTCGTCA
TCGACGTCGGGAACACCCTCCACGCCGCCGCCGCCGAGTGATGGCATCGCCTGCAAACTATTCGTGTGGTCTGTAATCTG
TATGAAATTGTTCATGGTACGTACACGATATATAGATTGTGGCGTGTCATGGCGTATAGGAATGAACCCGATCGAGGAAG
CTATTGTTGGTAGTCTGATGCTAGTCAGCTCAGTGTTTGACTGTTTGCATTTACGGATTGAAATTGAGCTTTGTGTGGCC
TAAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7496.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis