Browse Element(s) Details


OsAffx.18445.1.S1_at

Description tigr:9638.m02513
TID=OsAffx.18445.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=snRNP protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2944011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein
LOC_Os10g29390OsAffx.20320.1.S1_at11/1110+14942245..14943338BTB/POZ domain containing protein, expressed
LOC_Os10g29400OsAffx.32023.1.S1_at11/1110+14945067..14948962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29430OsAffx.30588.1.S1_at11/1110+14960950..14963552hypothetical protein
LOC_Os10g29440OsAffx.18445.1.S1_at11/1110+14964658..14965809BTB/POZ domain containing protein, expressed
LOC_Os10g29450OsAffx.30795.1.S1_at11/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.1.S1_x_at10/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.3.S1_at4/1110+14971269..14971820hypothetical protein
LOC_Os10g29460OsAffx.30589.1.S1_at11/1110+14973201..14973872MATH domain containing protein
LOC_Os10g29470Os.7496.1.S1_a_at11/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29470OsAffx.20940.1.S1_at1/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18445.1.S1_at--241--911Chr10:14965385..14965409 (25 bp)
AGGCGGAGCTGTACGGCCCGATGGT
LOC_Os10g29440
OsAffx.18445.1.S1_at--375--4251Chr10:14965421..14965445 (25 bp)
CCGGGCGCGTCATCCGGATCGACGA
LOC_Os10g29440
OsAffx.18445.1.S1_at--518--6711Chr10:14965461..14965485 (25 bp)
GTTCGACGCGTTGCTCGACTTCATG
LOC_Os10g29440
OsAffx.18445.1.S1_at--630--9171Chr10:14965499..14965523 (25 bp)
TGCCCGGGATGAGGAAGCGCGACGC
LOC_Os10g29440
OsAffx.18445.1.S1_at--296--9131Chr10:14965586..14965610 (25 bp)
TGCTGTGCGAGCATGAGCTGTGCAA
LOC_Os10g29440
OsAffx.18445.1.S1_at--831--691Chr10:14965598..14965622 (25 bp)
ATGAGCTGTGCAAGCACGTGAACAA
LOC_Os10g29440
OsAffx.18445.1.S1_at--140--3411Chr10:14965635..14965659 (25 bp)
CAGCATGCTGGCATTGGTCGAACAG
LOC_Os10g29440
OsAffx.18445.1.S1_at--606--31Chr10:14965647..14965671 (25 bp)
ATTGGTCGAACAGCAACGCCCTAGC
LOC_Os10g29440
OsAffx.18445.1.S1_at--1047--2931Chr10:14965687..14965711 (25 bp)
AAGGCATGCTTTGAGTACCTCCGAA
LOC_Os10g29440
OsAffx.18445.1.S1_at--993--2791Chr10:14965721..14965745 (25 bp)
AAGTTCTACGTGAAATCATGGCGAC
LOC_Os10g29440
OsAffx.18445.1.S1_at--173--9931Chr10:14965727..14965751 (25 bp)
TACGTGAAATCATGGCGACGGAAGC
LOC_Os10g29440
Target Sequence 
AGGCGGAGCTGTACGGCCCGATGGTGGAGCGGGACGCCGGGCGCGTCATCCGGATCGACGACATGGACCCCCAGGTGTTC
GACGCGTTGCTCGACTTCATGTACACCGACGCCCTGCCCGGGATGAGGAAGCGCGACGCGGTGGCCATGTCGCAGCAGCT
GCTCGTCGCGGCGGACAGGTACGACCTGAAGAGGCTGAGGCTGCTGTGCGAGCATGAGCTGTGCAAGCACGTGAACAAGG
GCACGGTGGCCAGCATGCTGGCATTGGTCGAACAGCAACGCCCTAGCTGCCAGGGGCTCAAGAAGGCATGCTTTGAGTAC
CTCCGAAAAACACCGAAAGTTCTACGTGAAATCATGGCGACGGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis