Browse Element(s) Details


OsAffx.20320.1.S1_at

Description tigr:9638.m02508
TID=OsAffx.20320.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2939011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein
LOC_Os10g29350OsAffx.8105.1.S1_at10/1110+14932709..14934435hypothetical protein
LOC_Os10g29360NANA10+14935458..14935796BTB/POZ domain containing protein
LOC_Os10g29370OsAffx.30586.1.S1_at11/1110+14937172..14937642speckle-type POZ protein, putative
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein
LOC_Os10g29390OsAffx.20320.1.S1_at11/1110+14942245..14943338BTB/POZ domain containing protein, expressed
LOC_Os10g29400OsAffx.32023.1.S1_at11/1110+14945067..14948962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29430OsAffx.30588.1.S1_at11/1110+14960950..14963552hypothetical protein
LOC_Os10g29440OsAffx.18445.1.S1_at11/1110+14964658..14965809BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20320.1.S1_at--522--5131Chr10:14942738..14942762 (25 bp)
GCAAAGACCACGGAAGGCGAACTTC
LOC_Os10g29390
OsAffx.20320.1.S1_at--996--10471Chr10:14942806..14942830 (25 bp)
TTCTCCACAACGAGAAGGGCGCCGA
LOC_Os10g29390
OsAffx.20320.1.S1_at--841--2751Chr10:14943043..14943067 (25 bp)
AAGACACCATGGCTCAGCATCTGCT
LOC_Os10g29390
OsAffx.20320.1.S1_at--917--1171Chr10:14943130..14943154 (25 bp)
AGTACATTGATGTGGGCACGGTGAC
LOC_Os10g29390
OsAffx.20320.1.S1_at--1022--5091Chr10:14943145..14943169 (25 bp)
GCACGGTGACGACCATCCTGACGCT
LOC_Os10g29390
OsAffx.20320.1.S1_at--980--8931Chr10:14943163..14943187 (25 bp)
TGACGCTGGCTGAGCAACACCACTG
LOC_Os10g29390
OsAffx.20320.1.S1_at--501--5951Chr10:14943174..14943198 (25 bp)
GAGCAACACCACTGCGAAGGGCTAA
LOC_Os10g29390
OsAffx.20320.1.S1_at--378--2351Chr10:14943240..14943264 (25 bp)
AAAGCAGTTGCTTCTGGCGACGGCA
LOC_Os10g29390
OsAffx.20320.1.S1_at--157--4611Chr10:14943256..14943280 (25 bp)
GCGACGGCATCGAGGATCTGAGTAA
LOC_Os10g29390
OsAffx.20320.1.S1_at--539--7971Chr10:14943269..14943293 (25 bp)
GGATCTGAGTAAAAGCTGCCCATCT
LOC_Os10g29390
OsAffx.20320.1.S1_at--586--2351Chr10:14943280..14943304 (25 bp)
AAAGCTGCCCATCTCTTATGAAGGA
LOC_Os10g29390
Target Sequence 
GCAAAGACCACGGAAGGCGAACTTCGTCTCCGTGCCTCCGTCCGATCTGCAGCGGCATCTGGGGGATCTTCTCCACAACG
AGAAGGGCGCCGACGTGGTGTTCGAGGCCGGCGGCGAGACTTTCGCCGCTCACCGGTGCGTGCTCGCGGCGCGGTCACCG
GTCTTCAGCGCGGAGCTGTTTGGCTCGATGAAGGAGAGCGACGCCGCGGGTGTCGTCCGCATCGACGACATGGAGGCTCA
GGTGTTCAAGGCGCTGCTCCGCTTCGTGTACACCGACTCGCTTCCGGAGACGGAAGAGGAGGAGCAAGACACCATGGCTC
AGCATCTGCTCGTCGCGGCGGACAGGTACGCCATGGAGAGGCTCAAGCTCATCTGCGAGGACATGCTGTGCAAGTACATT
GATGTGGGCACGGTGACGACCATCCTGACGCTGGCTGAGCAACACCACTGCGAAGGGCTAAAGAAGGCATGCTTTGATTT
CCTCAGCTCCGCGGTGAATCTGAAAGCAGTTGCTTCTGGCGACGGCATCGAGGATCTGAGTAAAAGCTGCCCATCTCTTA
TGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis