Browse Element(s) Details


OsAffx.18443.1.S1_at

Description tigr:9638.m02503
TID=OsAffx.18443.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2934010/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein
LOC_Os10g29350OsAffx.8105.1.S1_at10/1110+14932709..14934435hypothetical protein
LOC_Os10g29360NANA10+14935458..14935796BTB/POZ domain containing protein
LOC_Os10g29370OsAffx.30586.1.S1_at11/1110+14937172..14937642speckle-type POZ protein, putative
LOC_Os10g29380OsAffx.18444.1.S1_at11/1110+14939196..14940874BTB/POZ domain containing protein
LOC_Os10g29390OsAffx.20320.1.S1_at11/1110+14942245..14943338BTB/POZ domain containing protein, expressed
LOC_Os10g29400OsAffx.32023.1.S1_at11/1110+14945067..14948962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g29410OsAffx.30587.1.S1_at11/1110+14950564..14951769BTB/POZ domain containing protein
LOC_Os10g29420Os.46481.3.S1_at3/1110+14952312..14958507retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18443.1.S1_at--1078--2811Chr10:14930431..14930455 (25 bp)
AAGTACCAGATTGAGCTGGCCGATA
LOC_Os10g29340
OsAffx.18443.1.S1_at--339--2731Chr10:14930473..14930497 (25 bp)
AAGCAACCTTCGCTGATATCCAAGC
LOC_Os10g29340
OsAffx.18443.1.S1_at--235--2651Chr10:14930119..14930592 (25 bp)
AAGCCATCTAAATATCTCAGGGACG
NONE
OsAffx.18443.1.S1_at--208--8111Chr10:14930588..14930612 (25 bp)
GGACGACTGTTTCACCATTCGGTGT
LOC_Os10g29340
OsAffx.18443.1.S1_at--1046--5671Chr10:14930613..14930637 (25 bp)
GACATAGTCGTCATGCGTGAGATTC
LOC_Os10g29340
OsAffx.18443.1.S1_at--367--6051Chr10:14930631..14930655 (25 bp)
GAGATTCGCACTGAGGAAGCAACAT
LOC_Os10g29340
OsAffx.18443.1.S1_at--804--5371Chr10:14930646..14930670 (25 bp)
GAAGCAACATTTGTGTCCGTTCCCC
LOC_Os10g29340
OsAffx.18443.1.S1_at--711--8991Chr10:14930680..14930704 (25 bp)
TGAAGCAGCAGCTCGGAGACCTCCT
LOC_Os10g29340
OsAffx.18443.1.S1_at--948--9331Chr10:14930969..14930993 (25 bp)
TCGCTGCGGATCGTTACAACCTGAA
LOC_Os10g29340
OsAffx.18443.1.S1_at--630--7831Chr10:14931043..14931067 (25 bp)
GGTACCGTGGCGAGCATCCTGGCAC
LOC_Os10g29340
OsAffx.18443.1.S1_at--629--1951Chr10:14931066..14931090 (25 bp)
ACTGGCTGATCAGCACTACTGCGAT
LOC_Os10g29340
Target Sequence 
AAGTACCAGATTGAGCTGGCCGATAGGGTGAAGAAGAAGAAGAAGCAACCTTCGCTGATATCCAAGCCATCTAAATATCT
CAGGGACGACTGTTTCACCATTCGGTGTGACATAGTCGTCATGCGTGAGATTCGCACTGAGGAAGCAACATTTGTGTCCG
TTCCCCCATCCGACCTGAAGCAGCAGCTCGGAGACCTCCTCGAGACCGGGAAGGGCGCCGACGTGGTGTTTGAGGTCGGC
GGCGGCGAGACTTTCTTCGGCTCGATGAAGGAGAGCGACGCCGCCGCCGGAGGAGTCGTGCGCATCGAAGAGATGGAGGC
TCAGGTGTTCAAGCTGTTGCTCCGCTTCGTGTACACCGACTCGTTGCCGAAGATGAAGGAGGAAGACGTCATGTGCCAGC
ATCTGCTCGTCGCTGCGGATCGTTACAACCTGAAGAGGCTCAAGCTGATCTGCGAGAAGAAGTTGTGCAAGTACATTGGC
GTGGGTACCGTGGCGAGCATCCTGGCACTGGCTGATCAGCACTACTGCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis