Browse Element(s) Details


OsAffx.18441.1.S1_at

Description tigr:9638.m02498
TID=OsAffx.18441.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2929011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29220Os.46819.2.S1_x_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29220Os.46819.1.S1_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein
LOC_Os10g29260OsAffx.30584.1.S1_at11/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29260OsAffx.30585.1.S1_at1/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed
LOC_Os10g29320OsAffx.30585.1.S1_at1/1110+14919360..14921504BTB/POZ domain containing protein, expressed
LOC_Os10g29330OsAffx.30585.1.S1_at11/1110+14926490..14927779BTB/POZ domain containing protein
LOC_Os10g29340OsAffx.18443.1.S1_at10/1110+14930155..14931159BTB/POZ domain containing protein
LOC_Os10g29350OsAffx.8105.1.S1_at10/1110+14932709..14934435hypothetical protein
LOC_Os10g29360NANA10+14935458..14935796BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18441.1.S1_at--55--331Chr10:14910798..14910822 (25 bp)
ATACTCCCCGCTGGATCCTTTGTAT
LOC_Os10g29290
OsAffx.18441.1.S1_at--247--671Chr10:14910840..14910864 (25 bp)
ATGAACCGGCATTTCGGTGACCTGC
LOC_Os10g29290
OsAffx.18441.1.S1_at--850--4691Chr10:14911125..14911149 (25 bp)
GCGGCGGATCGGTACGACCTACAAA
LOC_Os10g29290
OsAffx.18441.1.S1_at--403--1871Chr10:14911138..14911162 (25 bp)
ACGACCTACAAAGGCTCAAGCTGAT
LOC_Os10g29290
OsAffx.18441.1.S1_at--1035--7011Chr10:14911184..14911208 (25 bp)
GTACATTGGCGTATGCACGGTGTCA
LOC_Os10g29290
OsAffx.18441.1.S1_at--353--6911Chr10:14911194..14911218 (25 bp)
GTATGCACGGTGTCAAACATCCTGG
LOC_Os10g29290
OsAffx.18441.1.S1_at--369--7091Chr10:14911205..14911229 (25 bp)
GTCAAACATCCTGGCACTAGCTGAT
LOC_Os10g29290
OsAffx.18441.1.S1_at--297--2031Chr10:14911220..14911244 (25 bp)
ACTAGCTGATCAGCACCATTGCGAC
LOC_Os10g29290
OsAffx.18441.1.S1_at--813--6711Chr10:14911267..14911291 (25 bp)
GTTTTCTTGGCTCACCGGCAAACCT
LOC_Os10g29290
OsAffx.18441.1.S1_at--450--1751Chr10:14911288..14911312 (25 bp)
ACCTCAGTGCTTTCGTCGCCGACGA
LOC_Os10g29290
OsAffx.18441.1.S1_at--872--4511Chr10:14911305..14911329 (25 bp)
GCCGACGATGGCTTGGACCATCTGA
LOC_Os10g29290
Target Sequence 
ATACTCCCCGCTGGATCCTTTGTATCCGTGCCCCCGTCCGAGATGAACCGGCATTTCGGTGACCTGCTGGAGACCGAGAA
GGGCGCCGACGTGGTGTTCGAGGTCGCCGGCGAGAGCTTCGCCGCGCACCGGTGCGTGCTCGCGGCGCGGTCGCCGGTGT
TCGGAGCCGAGCTCTACGGCCTGATGAAGGAGGGCGACACTGCTGGAGTCGTACGCATCGAAGACATGGAGGCGCAGGTG
TTCAAGATGCTGCTCCGCTTCGTGTACACTGACTCTTTGCCGGAGATGGAGGCGGAGGAAGACGTCATGTGCCAGCATCT
GATCGTCGCGGCGGATCGGTACGACCTACAAAGGCTCAAGCTGATCTGCGAGGAGAAGCTGTGCAAGTACATTGGCGTAT
GCACGGTGTCAAACATCCTGGCACTAGCTGATCAGCACCATTGCGACGGGCTGAAGAAGGCGTGCTTCAGTTTTCTTGGC
TCACCGGCAAACCTCAGTGCTTTCGTCGCCGACGATGGCTTGGACCATCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis