Browse Element(s) Details


Os.35837.2.S1_x_at

Description gb:AK065574.1
DB_XREF= gi:32975592
TID=Os.35837.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0073D04.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013027G06, full insert sequence.
FL= gb:AK065574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2924011/11expressed protein
LOC_Os07g238108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29180Os.46505.1.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.3.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29190Os.46819.2.S1_x_at1/1110+14875669..14876711BTB/POZ domain containing protein
LOC_Os10g29210NANA10+14879865..14881141retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29220Os.46819.2.S1_x_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29220Os.46819.1.S1_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein
LOC_Os10g29260OsAffx.30584.1.S1_at11/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29260OsAffx.30585.1.S1_at1/1110+14898764..14899728BTB/POZ domain containing protein
LOC_Os10g29274Os.46319.1.S1_s_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.3.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.2.S1_x_at11/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.26733.1.S1_at7/1110+14900075..14905198expressed protein
LOC_Os10g29274OsAffx.5828.1.S1_x_at3/1110+14900075..14905198expressed protein
LOC_Os10g29274Os.52575.1.S1_x_at2/1110+14900075..14905198expressed protein
LOC_Os10g29290OsAffx.18441.1.S1_at11/1110+14910306..14911397BTB/POZ domain containing protein
LOC_Os10g29300OsAffx.20322.1.S1_at10/1110+14914015..14915082hypothetical protein
LOC_Os10g29310Os.46456.1.S1_at11/1110+14915615..14917080BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35837.2.S1_x_at--702--3172Chr07:13443349..13443373 (25 bp)
AATTGTCATCGGTTCAGCGCTATAA
LOC_Os07g23810
Os.35837.2.S1_x_at--399--6072Chr07:13443518..13443542 (25 bp)
GAGTTTAACTCTCAATTGTTCGCAA
LOC_Os07g23810
Os.35837.2.S1_x_at--1096--7991Chr10:14891775..14891799 (25 bp)
GGAGGCAAATGCAGTCCTTTTCCCT
LOC_Os10g29240
Os.35837.2.S1_x_at--284--9312Chr07:13443621..13443645 (25 bp)
TCCCGTACCTAATTCATATGCTTTC
LOC_Os07g23810
Os.35837.2.S1_x_at--243--9772Chr07:13443650..13443674 (25 bp)
TAATCCTTGCAATTGCCTCAGAAGT
LOC_Os07g23810
Os.35837.2.S1_x_at--88--9753Chr12:10805792..10805817 (25 bp)
TAATCTTGTTTTCTTCCTAGGCTCC
NONE
Os.35837.2.S1_x_at--1158--892Chr07:13443703..13443727 (25 bp)
AGGCTCCTCGGTTATCTTATTGGTT
LOC_Os07g23810
Os.35837.2.S1_x_at--211--7411Chr10:14891556..14891580 (25 bp)
GTGTTTTCAGTCGTTTTTCACCGAT
LOC_Os10g29240
Os.35837.2.S1_x_at--598--10331Chr10:14891541..14891565 (25 bp)
TTTCACCGATCGATACCTATTCAGT
LOC_Os10g29240
Os.35837.2.S1_x_at--23--7892Chr07:13443874..13443962 (25 bp)
GGTTTTCCACATGTACTTTTAGCAT
LOC_Os07g23810
Os.35837.2.S1_x_at--397--52Chr07:13443899..13443923 (25 bp)
ATTGTTTCTTGCATGTGACCTTCTT
LOC_Os07g23810
Target Sequence 
AATTGTCATCGGTTCAGCGCTATAAACTCCCCTATAAAACTTACCATGAGGCATATTTTCAAGAATTAATCATGAGTTTA
ACTCTCAATTGTTCGCAATGCTAGCACAGGTGCAGTAATGACATATGACAATGAAGATTTGATTCGGCAATGGAGGCAAA
TGCAGTCCTTTTCCCTTCCCGTACCTAATTCATATGCTTTCTATTTAATCCTTGCAATTGCCTCAGAAGTTGAATGAATC
TAATCTTGTTTTCTTCCTAGGCTCCTCGGTTATCTTATTGGTTTGTTGTTTGCTTGTTAGGACTGAGTTGACGACAAATC
GAACTGAAGAAGAATTTGTGGGCGAAAAGTGCTACTGGTACTGTTATTAAGTGTTTTCAGTCGTTTTTCACCGATCGATA
CCTATTCAGTCATTGATTTCAATCTTGATGGTTTTCCACATGTACTTTTAGCATATTGTTTCTTGCATGTGACCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35837.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis