Browse Element(s) Details


Os.46505.3.S1_x_at

Description gb:NM_196594.1
DB_XREF= gi:37534547
TID=Os.46505.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46505 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative speckle-type protein (OSJNBa0073D04.4), mRNA.
PROD=putative speckle-type protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2918011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29130OsAffx.30582.1.S1_s_at10/1110+14847117..14847476hypothetical protein
LOC_Os10g29150OsAffx.8109.1.S1_at11/1110+14853400..14854572BTB/POZ domain containing protein, expressed
LOC_Os10g29159OsAffx.10196.1.S1_x_at1/1110+14857358..14857600hypothetical protein
LOC_Os10g29170Os.46399.1.A1_at10/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.5.S1_x_at3/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29170OsAffx.15781.4.S1_x_at2/1110+14861610..14865185hAT family dimerisation domain containing protein, expressed
LOC_Os10g29180Os.46505.1.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.3.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_x_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29180Os.46505.2.S1_at11/1110+14870042..14872768BTB/POZ domain containing protein, expressed
LOC_Os10g29190Os.46819.2.S1_x_at1/1110+14875669..14876711BTB/POZ domain containing protein
LOC_Os10g29210NANA10+14879865..14881141retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g29220Os.46819.2.S1_x_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29220Os.46819.1.S1_at11/1110+14884294..14885732BTB/POZ domain containing protein, expressed
LOC_Os10g29230NANA10+14888861..14889970BTB/POZ domain containing protein, expressed
LOC_Os10g29240Os.35837.2.S1_x_at11/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_x_at4/1110+14891416..14893725expressed protein
LOC_Os10g29240OsAffx.16386.1.S1_at3/1110+14891416..14893725expressed protein
LOC_Os10g29250OsAffx.20323.1.S1_at11/1110+14895253..14895597hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46505.3.S1_x_at--894--8971Chr10:14871058..14871082 (25 bp)
TGAACATCCTGGTGCTTGCTGATCA
LOC_Os10g29180
Os.46505.3.S1_x_at--977--9111Chr10:14871074..14871098 (25 bp)
TGCTGATCAGCATCACTGCGACGGG
LOC_Os10g29180
Os.46505.3.S1_x_at--556--6811Chr10:14871112..14871136 (25 bp)
GTTTTAGTTTTCTTGGCTCACTGGA
LOC_Os10g29180
Os.46505.3.S1_x_at--481--1431Chr10:14871136..14871160 (25 bp)
AGAACCTGAGTGCTGTTGTCACCGG
LOC_Os10g29180
Os.46505.3.S1_x_at--437--10811Chr10:14871151..14871175 (25 bp)
TTGTCACCGGCGATGGCTTGGAGCA
LOC_Os10g29180
Os.46505.3.S1_x_at--288--10791Chr10:14871214..14871238 (25 bp)
TTGTTGTGATGGCACTTCCACCGAA
LOC_Os10g29180
Os.46505.3.S1_x_at--404--9211Chr10:14871230..14871306 (25 bp)
TCCACCGAATCATGTTCTGAACCTT
LOC_Os10g29180
Os.46505.3.S1_x_at--402--1091Chr10:14871480..14871504 (25 bp)
AGGGCCCGTCACTTGTGTCTGAATA
LOC_Os10g29180
Os.46505.3.S1_x_at--116--3171Chr10:14872324..14872348 (25 bp)
AATTGCCACCAATCGAGCGTGTGAC
LOC_Os10g29180
Os.46505.3.S1_x_at--1002--3011Chr10:14872523..14872547 (25 bp)
AATGCCCGGATCTTCGAGCAGAGAT
LOC_Os10g29180
Os.46505.3.S1_x_at--665--1351Chr10:14872542..14872566 (25 bp)
AGAGATCGCGCACAGCAGGTCAGCT
LOC_Os10g29180
Target Sequence 
TGAACATCCTGGTGCTTGCTGATCAGCATCACTGCGACGGGCTGAAGAAGGCGTGTTTTAGTTTTCTTGGCTCACTGGAG
AACCTGAGTGCTGTTGTCACCGGCGATGGCTTGGAGCATCTGAGCAGGAGCTACCCCTCTCTTATGAAAGAACTATTTGT
TGTGATGGCACTTCCACCGAATCATGTTCTGAACCTTTCTCATCAGGTATACTATGAAAACCAAAACTTCAATGTTTTAC
TGCTTTTGATCAAGAATAGTGACTTGACTGGAGTTAATTTGAAGAAAACAGGCTGGCAGGGCCCGTCACTTGTGTCTGAA
TATGATGTATCATATTCTTCAGGGGATCCAGGAAAATTGCCACCAATCGAGCGTGTGACTGTGGAGAATGCTCAAGGGGT
GGATCACTGCCCCGTTTCAGCTTCCGGCAGAGAGTGGTGCTCAGCTTGTGGACTGGTGGCTGATGGCAAGGAGCGTAATG
CCCGGATCTTCGAGCAGAGATCGCGCACAGCAGGTCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46505.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis