Browse Element(s) Details


OsAffx.15781.4.S1_x_at

Description tigr:9632.m02000
TID=OsAffx.15781.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2174011/11hypothetical protein
LOC_Os05g1444010/11hAT family dimerisation domain containing protein
LOC_Os05g145009/11hAT family dimerisation domain containing protein
LOC_Os04g121908/11transposase, putative
LOC_Os10g291702/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g21710Os.4923.1.S1_at11/114+12254502..12256920expressed protein
LOC_Os04g21720OsAffx.13909.1.S1_at11/114+12265464..12265940hypothetical protein
LOC_Os04g21730OsAffx.13910.1.S1_at10/114+12272443..12273748XH domain containing protein
LOC_Os04g21740OsAffx.15781.4.S1_x_at11/114+12275518..12278170hypothetical protein
LOC_Os04g21740OsAffx.15781.5.S1_x_at7/114+12275518..12278170hypothetical protein
LOC_Os04g21750OsAffx.30435.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.20553.1.S1_at3/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.22699.1.S1_x_at2/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.16111.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.19776.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.8201.1.S1_x_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21750OsAffx.199.1.S1_at1/114+12281187..12287119retrotransposon protein, putative, unclassified
LOC_Os04g21760OsAffx.3761.1.S1_x_at1/114+12287949..12290687hypothetical protein
LOC_Os04g21770NANA4+12293611..12294282retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g21780OsAffx.26087.2.S1_at11/114+12298339..12298798hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15781.4.S1_x_at--1147--2454Chr05:8176865..8176888 (24 bp)
AACAAGTGACTTCTGCAATGCTCTG
LOC_Os05g14500
OsAffx.15781.4.S1_x_at--675--5575Chr05:8176992..8177016 (25 bp)
GAAAGGTCACTTCTTTTTGTGTGAA
LOC_Os05g14500
OsAffx.15781.4.S1_x_at--46--2011Chr04:12277880..12277904 (25 bp)
ACTAATTACCATCGATTCCATGCCG
LOC_Os04g21740
OsAffx.15781.4.S1_x_at--719--3534Chr05:8177111..8177135 (25 bp)
CATGCCGATATGTTTTTGGGTGTCA
LOC_Os05g14500
OsAffx.15781.4.S1_x_at--634--10774Chr05:8177136..8177205 (25 bp)
TTGATAGGCAACTTAGATGCATGGC
LOC_Os05g14500
OsAffx.15781.4.S1_x_at--636--6334Chr05:8177196..8177220 (25 bp)
GATGCATGGCATCATTTAGCCCAGC
LOC_Os05g14500
OsAffx.15781.4.S1_x_at--540--2274Chr05:8177222..8177246 (25 bp)
AAATCCTTCTCTGCTTTTAATGTTG
LOC_Os05g14500
OsAffx.15781.4.S1_x_at--317--2714Chr05:8177258..8177282 (25 bp)
AAGCTTGCCAAGTTCTATCCTAGTG
LOC_Os05g14500
OsAffx.15781.4.S1_x_at--180--8994Chr05:8177293..8177317 (25 bp)
TGAAGAAATGAACCAACTCCCCTTT
LOC_Os05g14500
OsAffx.15781.4.S1_x_at--793--9294Chr05:8177310..8177334 (25 bp)
TCCCCTTTCAACTGAACCGCTATAT
LOC_Os05g14500
OsAffx.15781.4.S1_x_at--89--5352Chr04:12278115..12278139 (25 bp)
GAAGTTTAGCAGACCTATCTATGAT
LOC_Os04g21740
Target Sequence 
AACAAGTGACTTCTGCAATGCTCTGCAAAGGAGGGAGCAAGATATTGTGAATGCAATGGATCTTCTTGAGTTCACAAAGG
CAGAACTTGATGTTTTGAGAGAAGATTGTGGATGGAAAGAATTTCTTGGAAAGGTCACTTCTTTTTGTGTGAAGCACAAA
GTTAAAGTTGTTGACATGGATGGGAAGTATAAGCCTATACAAAGATCGAGGAAATTCTTCAAAGATGCTACTAATTACCA
TCGATTCCATGCCGATATGTTTTTGGGTGTCATTGATAGGCAACTTAGATGCATGGCATCATTTAGCCCAGCCAAATCCT
TCTCTGCTTTTAATGTTGACAACTTAGTTAAGCTTGCCAAGTTCTATCCTAGTGATTTTGATGTTGAAGAAATGAACCAA
CTCCCCTTTCAACTGAACCGCTATATTAGTGATGTGGGTAAGGATGAGAATTTCAGAAATTTGAGAAGTTTAGCAGACCT
ATCTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15781.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis