Browse Element(s) Details


OsAffx.199.1.S1_at

Description gb:NM_196248.1
DB_XREF= gi:37533855
TID=OsAffx.199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0094H10.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2466011/11retrotransposon protein, putative, unclassified
LOC_Os05g154602/11retrotransposon protein, putative, unclassified
LOC_Os08g110001/11retrotransposon protein, putative, unclassified
LOC_Os05g152701/11retrotransposon protein, putative, unclassified
LOC_Os02g553501/11retrotransposon protein, putative, unclassified
LOC_Os11g454401/11retrotransposon protein, putative, unclassified
LOC_Os04g217501/11retrotransposon protein, putative, unclassified
LOC_Os11g030101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24640OsAffx.8177.1.S1_at11/1110+12327140..12330936retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g24650NANA10+12337868..12340181hypothetical protein
LOC_Os10g24660OsAffx.199.1.S1_at11/1110+12341026..12341781retrotransposon protein, putative, unclassified
LOC_Os10g24670NANA10+12345704..12347092retrotransposon protein, putative, unclassified
LOC_Os10g24680NANA10+12349157..12349750transposon protein, putative, unclassified
LOC_Os10g24690Os.36118.1.S1_at11/1110+12358036..12359032expressed protein
LOC_Os10g24700OsAffx.31828.1.S1_at2/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.20615.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.10371.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.16111.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.20604.2.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified
LOC_Os10g24700OsAffx.27937.1.S1_at1/1110+12363145..12370001retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.199.1.S1_at--326--9671Chr10:12341406..12341430 (25 bp)
TCAGCTGATGAGGTCGAAGCCGACA
LOC_Os10g24660
OsAffx.199.1.S1_at--856--8331Chr10:12341356..12341380 (25 bp)
GGCTGTTGCTTCTTCATTGGTTTAC
LOC_Os10g24660
OsAffx.199.1.S1_at--269--3511Chr10:12341332..12341356 (25 bp)
CATGGTCTTTATATTGCCAGCAAAA
LOC_Os10g24660
OsAffx.199.1.S1_at--113--231Chr10:12341308..12341332 (25 bp)
ATATTGTGCTAAACCAGCCGATGCA
LOC_Os10g24660
OsAffx.199.1.S1_at--466--9551Chr10:12341268..12341292 (25 bp)
TCTTTGGCTAAGTTGGGTCTGTCAC
LOC_Os10g24660
OsAffx.199.1.S1_at--1035--7691Chr10:12341254..12341278 (25 bp)
GGGTCTGTCACCTAAGCAAGCTATC
LOC_Os10g24660
OsAffx.199.1.S1_at--847--2715Chr11:1044842..1045196 (25 bp)
AAGCAAGCTATCTTTGAGAAGCCAG
LOC_Os11g03010
OsAffx.199.1.S1_at--812--7591Chr10:12341208..12341232 (25 bp)
GGGCATCGGCATTTGAAGCCGTTAT
LOC_Os10g24660
OsAffx.199.1.S1_at--497--7673Chr10:12341176..12341200 (25 bp)
GGGATTTGTCAATGGCAAGCCGATC
LOC_Os10g24660
OsAffx.199.1.S1_at--837--4774Chr04:12283836..12284290 (25 bp)
GCTGCTGTGAACTTGATGCCTTATT
LOC_Os04g21750
OsAffx.199.1.S1_at--7--2071Chr10:12341117..12341141 (25 bp)
ACTTGATGCCTTATTCTACCTTCAG
LOC_Os10g24660
Target Sequence 
TCAGCTGATGAGGTCGAAGCCGACAAGGCGAGATGGTTAGCCAAAGGGAAGGCTGTTGCTTCTTCATTGGTTTACATGGT
CTTTATATTGCCAGCAAAATATTGTGCTAAACCAGCCGATGCAGAAATCATGGAAGAATCTTTGGCTAAGTTGGGTCTGT
CACCTAAGCAAGCTATCTTTGAGAAGCCAGAAGGAACAGGGCATCGGCATTTGAAGCCGTTATATGTCAAGGGATTTGTC
AATGGCAAGCCGATCTCCAAGATGTTAGTTGATGGTGGGGCTGCTGTGAACTTGATGCCTTATTCTACCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis