Browse Element(s) Details


OsAffx.20604.2.S1_at

Description gb:NM_194872.1
DB_XREF= gi:37531103
TID=OsAffx.20604.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OSJNBa0028C16.4), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0607011/11retrotransposon protein, putative, unclassified
LOC_Os04g242602/11retrotransposon protein, putative, unclassified
LOC_Os06g020702/11retrotransposon protein, putative, unclassified
LOC_Os04g192801/11retrotransposon protein, putative, unclassified
LOC_Os10g247001/11retrotransposon protein, putative, unclassified
LOC_Os08g115901/11retrotransposon protein, putative, unclassified
LOC_Os04g183301/11retrotransposon protein, putative, unclassified
LOC_Os08g214601/11retrotransposon protein, putative, unclassified
LOC_Os08g120401/11retrotransposon protein, putative, unclassified
LOC_Os11g028901/11retrotransposon protein, putative, unclassified
LOC_Os09g030101/11retrotransposon protein, putative, unclassified
LOC_Os04g165701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06030OsAffx.20742.3.S1_x_at11/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.4.S1_x_at9/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.20742.2.S1_x_at8/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06030OsAffx.29386.2.S1_at1/1110+3045084..3049695Protein kinase domain containing protein
LOC_Os10g06050Os.45161.1.A1_x_at1/1110+3057737..3060528retrotransposon protein, putative, unclassified
LOC_Os10g06070OsAffx.20604.2.S1_at11/1110+3064240..3066150retrotransposon protein, putative, unclassified
LOC_Os10g06080OsAffx.30311.1.S1_at10/1110+3068712..3069646hypothetical protein
LOC_Os10g06090OsAffx.20742.1.S1_at11/1110+3074744..3081593Protein kinase domain containing protein
LOC_Os10g06100OsAffx.20743.1.S1_at11/1110+3089631..3091177retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20604.2.S1_at--33--3972Chr10:3064785..3064809 (25 bp)
CGGTTTGAGAGGGTTCCACTGCCAA
LOC_Os10g06070
OsAffx.20604.2.S1_at--235--6691Chr10:3064749..3064773 (25 bp)
GTTCCCGATTTCTCAAAGTTCTCAA
LOC_Os10g06070
OsAffx.20604.2.S1_at--818--2111Chr10:3064699..3064723 (25 bp)
ACATGTCAGTCGATTCTTGGCTCAG
LOC_Os10g06070
OsAffx.20604.2.S1_at--123--6211Chr10:3064668..3064692 (25 bp)
GAGGCATCGGCGGTTGACGCTTTAA
LOC_Os10g06070
OsAffx.20604.2.S1_at--387--10539Chr11:985729..985748 (20 bp)
TTCAGTTGTTTCCTTTGTCTTTGTC
LOC_Os11g02890
OsAffx.20604.2.S1_at--887--7251Chr10:3064618..3064642 (25 bp)
GTCCGGATCAGCATTCACATGGTTT
LOC_Os10g06070
OsAffx.20604.2.S1_at--831--3316Chr06:605845..605868 (24 bp)
CACATGGTTTTCTTCATTGCCTTAC
LOC_Os06g02070
OsAffx.20604.2.S1_at--416--6031Chr10:3064512..3064536 (25 bp)
GAGATGAAGCTCTCCGATCTGGCAG
LOC_Os10g06070
OsAffx.20604.2.S1_at--185--6211Chr10:3064477..3064501 (25 bp)
GAGGCATGATGAAACCGCGCAAGAT
LOC_Os10g06070
OsAffx.20604.2.S1_at--503--2511Chr10:3064385..3064409 (25 bp)
AACATATACAACTTCCTGCTAGCCA
LOC_Os10g06070
OsAffx.20604.2.S1_at--678--4732Chr11:12686981..12687356 (25 bp)
GCTGACCTAAGCCTTGACTTGGATA
NONE
Target Sequence 
CGGTTTGAGAGGGTTCCACTGCCAAACCGATACAAAGTTCCCGATTTCTCAAAGTTCTCAAGACAGAACAATGTTTCGAC
ATATGAACATGTCAGTCGATTCTTGGCTCAGTGTGGAGAGGCATCGGCGGTTGACGCTTTAAGGGTTCAGTTGTTTCCTT
TGTCTTTGTCCGGATCAGCATTCACATGGTTTTCTTCATTGCCTTACAATTTTGTTCAAGGTTGGGTCGATTTGGAGAAG
CAATTACATAGCTACTTCTACAGTGGGACCCATGAGATGAAGCTCTCCGATCTGGCAGCAGTTAGGCAGAGGCATGATGA
AACCGCGCAAGATTACATCCAGAGGTTCAGAGAAACATATACAAAAGCTGATAAAATTTTTGACTTGCTAATTCGGGAGA
AACATATACAACTTCCTGCTAGCCACATAATACCATCGGCTGACCTAAGCCTTGACTTGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20604.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis