Browse Element(s) Details


OsAffx.20743.1.S1_at

Description gb:NM_194874.1
DB_XREF= gi:37531107
TID=OsAffx.20743.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0028C16.6), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0610011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06070OsAffx.20604.2.S1_at11/1110+3064240..3066150retrotransposon protein, putative, unclassified
LOC_Os10g06080OsAffx.30311.1.S1_at10/1110+3068712..3069646hypothetical protein
LOC_Os10g06090OsAffx.20742.1.S1_at11/1110+3074744..3081593Protein kinase domain containing protein
LOC_Os10g06100OsAffx.20743.1.S1_at11/1110+3089631..3091177retrotransposon protein, putative, unclassified
LOC_Os10g06110OsAffx.8508.1.S1_at11/1110+3094723..3097486retrotransposon protein, putative, unclassified
LOC_Os10g06130Os.38047.1.S1_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06130Os.38047.2.S1_x_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06140OsAffx.20742.2.S1_x_at11/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.3.S1_x_at7/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.4.S1_x_at5/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.29386.2.S1_at1/1110+3106167..3111329Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20743.1.S1_at--835--5451Chr10:3090201..3090225 (25 bp)
GAACGGGATGATTTTCTGCGCGCCA
LOC_Os10g06100
OsAffx.20743.1.S1_at--448--4171Chr10:3090181..3090205 (25 bp)
CGCCATCCGTGATCGTTTGGAACAA
LOC_Os10g06100
OsAffx.20743.1.S1_at--247--711Chr10:3090131..3090155 (25 bp)
ATGATGGCAAGCACCGAGCGCTGGA
LOC_Os10g06100
OsAffx.20743.1.S1_at--210--8051Chr10:3090018..3090133 (25 bp)
GGAGTTGGCAATTACGCAGCGCATC
LOC_Os10g06100
OsAffx.20743.1.S1_at--598--1651Chr10:3090001..3090025 (25 bp)
AGCGCATCGGATCAGTGGCCTATCG
LOC_Os10g06100
OsAffx.20743.1.S1_at--807--3472Chr10:3089962..3089986 (25 bp)
CAGGTGCTCGCTTACATGATGTTTT
LOC_Os10g06100
OsAffx.20743.1.S1_at--1089--151Chr10:3089928..3089952 (25 bp)
ATTATTGATGCCTTTCCGTGGCGAT
LOC_Os10g06100
OsAffx.20743.1.S1_at--687--7391Chr10:3089863..3089887 (25 bp)
GTGATGTTTGTCTTCAACCTGCTTC
LOC_Os10g06100
OsAffx.20743.1.S1_at--611--2631Chr10:3089848..3089872 (25 bp)
AACCTGCTTCTGTGTCGCAAAGTCG
LOC_Os10g06100
OsAffx.20743.1.S1_at--646--6291Chr10:3089747..3089771 (25 bp)
GATGATTTTCATGCTCAGTATCCAG
LOC_Os10g06100
OsAffx.20743.1.S1_at--97--3451Chr10:3089732..3089756 (25 bp)
CAGTATCCAGATTTTCAGCTCGCGG
LOC_Os10g06100
Target Sequence 
GAACGGGATGATTTTCTGCGCGCCATCCGTGATCGTTTGGAACAAGCTCAACAAACCTACAAGACAGCATATGATGGCAA
GCACCGAGCGCTGGAGTTGGCAATTACGCAGCGCATCGGATCAGTGGCCTATCGCCTGCGGCTGCCTCCAGGTGCTCGCT
TACATGATGTTTTTCATGTTGGATTATTGATGCCTTTCCGTGGCGATCCGCCGGACCATGCGCCGCCCCTGCCTCCGACG
CATCATGGTGATGTTTGTCTTCAACCTGCTTCTGTGTCGCAAAGTCGTTTGGCACGTGGGGTTCGAGAGGTTCTTGTTCA
GTGGAAAGACAGGCCGGCGGCTGAGGCGTCCTGGGTCGGATTGGATGATTTTCATGCTCAGTATCCAGATTTTCAGCTCG
CGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis