Browse Element(s) Details


OsAffx.8508.1.S1_at

Description gb:NM_194875.1
DB_XREF= gi:37531109
TID=OsAffx.8508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0028C16.7), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0611011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06090OsAffx.20742.1.S1_at11/1110+3074744..3081593Protein kinase domain containing protein
LOC_Os10g06100OsAffx.20743.1.S1_at11/1110+3089631..3091177retrotransposon protein, putative, unclassified
LOC_Os10g06110OsAffx.8508.1.S1_at11/1110+3094723..3097486retrotransposon protein, putative, unclassified
LOC_Os10g06130Os.38047.1.S1_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06130Os.38047.2.S1_x_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06140OsAffx.20742.2.S1_x_at11/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.3.S1_x_at7/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.4.S1_x_at5/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.29386.2.S1_at1/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06150OsAffx.6589.1.S1_at11/1110+3118373..3119911NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8508.1.S1_at--1151--1211Chr10:3095235..3095259 (25 bp)
AGTTCGTCATGGTCGGAACACCTTC
LOC_Os10g06110
OsAffx.8508.1.S1_at--557--9151Chr10:3095204..3095228 (25 bp)
TGCGCACCGTGTTGCAGACACTGCA
LOC_Os10g06110
OsAffx.8508.1.S1_at--962--571Chr10:3095155..3095179 (25 bp)
ATCCAAGTGTGAGTTTGGCCTCTCC
LOC_Os10g06110
OsAffx.8508.1.S1_at--604--9231Chr10:3095130..3095154 (25 bp)
TCCATCTCGTACTTGGGACACGTTA
LOC_Os10g06110
OsAffx.8508.1.S1_at--341--8631Chr10:3095117..3095141 (25 bp)
TGGGACACGTTATCTCAAGCGCCGG
LOC_Os10g06110
OsAffx.8508.1.S1_at--839--5791Chr10:3094949..3094973 (25 bp)
GACGCTACTGCGGAAGGAAGGCTTC
LOC_Os10g06110
OsAffx.8508.1.S1_at--563--5971Chr10:3094915..3094939 (25 bp)
GAGACAGTGGCATCGGCGTTTCGAC
LOC_Os10g06110
OsAffx.8508.1.S1_at--792--9371Chr10:3094903..3094927 (25 bp)
TCGGCGTTTCGACAACTACAACACG
LOC_Os10g06110
OsAffx.8508.1.S1_at--187--1231Chr10:3094833..3094857 (25 bp)
AGTTCATTGTGGAGTGCGACGCATC
LOC_Os10g06110
OsAffx.8508.1.S1_at--1007--1031Chr10:3094802..3094826 (25 bp)
AGGTCCGGGCGCTGTGCTTCATCAA
LOC_Os10g06110
OsAffx.8508.1.S1_at--733--3971Chr10:3094767..3094791 (25 bp)
CGGTCGCATTCTTCAGCAAGACGAT
LOC_Os10g06110
Target Sequence 
AGTTCGTCATGGTCGGAACACCTTCGCCACGTGCGCACCGTGTTGCAGACACTGCAGGATCACCAACTCCGCCTCAAGCG
ATCCAAGTGTGAGTTTGGCCTCTCCTCCATCTCGTACTTGGGACACGTTATCTCAAGCGCCGGCGTTGCCATGGACCGGA
GCAAGATCCAGGCCGTCCTGGACTGGCCGCTGCCCAAAAATGCGTGCGCAGTTCGGGGCTTCCTCGGCTTGGCGGGCTAC
TACCGCCGTTTCATCCGCGACTCGGCACCATCGCCGCGCCCCTCACGACGCTACTGCGGAAGGAAGGCTTCCACTGGTCC
GAGACAGTGGCATCGGCGTTTCGACAACTACAACACGCACTCACGGCAGCTCCAGTCCTCCAGCTCCCGGATTTCAACAA
GGAGTTCATTGTGGAGTGCGACGCATCGAGCTCAGGTCCGGGCGCTGTGCTTCATCAAGGCGCCGGGCCGGTCGCATTCT
TCAGCAAGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis