Browse Element(s) Details


OsAffx.6589.1.S1_at

Description tigr:9638.m00530
TID=OsAffx.6589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0615011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06110OsAffx.8508.1.S1_at11/1110+3094723..3097486retrotransposon protein, putative, unclassified
LOC_Os10g06130Os.38047.1.S1_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06130Os.38047.2.S1_x_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06140OsAffx.20742.2.S1_x_at11/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.3.S1_x_at7/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.4.S1_x_at5/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.29386.2.S1_at1/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06150OsAffx.6589.1.S1_at11/1110+3118373..3119911NA
LOC_Os10g06160OsAffx.20741.1.S1_at11/1110+3125470..3126289transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06170NANA10+3138989..3145647retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6589.1.S1_at--958--2591Chr10:3119857..3119881 (25 bp)
AACGCTGCCAACTATTTGGCCAGCT
LOC_Os10g06150
OsAffx.6589.1.S1_at--332--10191Chr10:3119845..3119869 (25 bp)
TATTTGGCCAGCTCCGGATTCAAGG
LOC_Os10g06150
OsAffx.6589.1.S1_at--325--891Chr10:3119800..3119847 (25 bp)
AGGCCATCTGCCACCTGAGAATCGG
LOC_Os10g06150
OsAffx.6589.1.S1_at--930--9191Chr10:3119742..3119766 (25 bp)
TGCCTTGCGGAGCACCTGTAGGATA
LOC_Os10g06150
OsAffx.6589.1.S1_at--700--6931Chr10:3119725..3119749 (25 bp)
GTAGGATAGCTTTGTGTTCAGTCGT
LOC_Os10g06150
OsAffx.6589.1.S1_at--206--7411Chr10:3119712..3119736 (25 bp)
GTGTTCAGTCGTGTTATTAGTGGCC
LOC_Os10g06150
OsAffx.6589.1.S1_at--952--131Chr10:3119697..3119721 (25 bp)
ATTAGTGGCCGAGAACTCCAAGCGC
LOC_Os10g06150
OsAffx.6589.1.S1_at--440--4111Chr10:3119643..3119667 (25 bp)
CGAAGTGATTATCGCGGCTGCACCA
LOC_Os10g06150
OsAffx.6589.1.S1_at--604--8331Chr10:3119628..3119652 (25 bp)
GGCTGCACCAGTCCTAGACGCGTTG
LOC_Os10g06150
OsAffx.6589.1.S1_at--211--10031Chr10:3119614..3119638 (25 bp)
TAGACGCGTTGCAGGCTCTGTCAGT
LOC_Os10g06150
OsAffx.6589.1.S1_at--545--911Chr10:3119602..3119626 (25 bp)
AGGCTCTGTCAGTGCGCGCTGTCCA
LOC_Os10g06150
Target Sequence 
AACGCTGCCAACTATTTGGCCAGCTCCGGATTCAAGGCCATCTGCCACCTGAGAATCGGTGTTAACGACAAGCCGGGGAG
CACCATAGCCCTTGCCTTGCGGAGCACCTGTAGGATAGCTTTGTGTTCAGTCGTGTTATTAGTGGCCGAGAACTCCAAGC
GCGCCGCAAATGACGTTGTGCGGCCGGTGGGCGAAGTGATTATCGCGGCTGCACCAGTCCTAGACGCGTTGCAGGCTCTG
TCAGTGCGCGCTGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis