Browse Element(s) Details


OsAffx.20741.1.S1_at

Description gb:NM_194878.1
DB_XREF= gi:37531115
TID=OsAffx.20741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative TNP-like transposable element (OSJNBa0028C16.10), mRNA.
PROD=putative TNP-like transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0616011/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06130Os.38047.1.S1_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06130Os.38047.2.S1_x_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06140OsAffx.20742.2.S1_x_at11/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.3.S1_x_at7/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.4.S1_x_at5/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.29386.2.S1_at1/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06150OsAffx.6589.1.S1_at11/1110+3118373..3119911NA
LOC_Os10g06160OsAffx.20741.1.S1_at11/1110+3125470..3126289transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06170NANA10+3138989..3145647retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06180OsAffx.20689.1.S1_x_at2/1110+3150279..3150719hypothetical protein
LOC_Os10g06180OsAffx.20673.1.S1_x_at1/1110+3150279..3150719hypothetical protein
LOC_Os10g06180OsAffx.20695.1.S1_x_at1/1110+3150279..3150719hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20741.1.S1_at--564--5551Chr10:3126038..3126062 (25 bp)
GAAACGATTCCTTACTGATCAGCCG
LOC_Os10g06160
OsAffx.20741.1.S1_at--233--8851Chr10:3126023..3126047 (25 bp)
TGATCAGCCGATTTCCTCAATTCAG
LOC_Os10g06160
OsAffx.20741.1.S1_at--1105--3732Chr05:21067516..21067540 (25 bp)
CTCAATTCAGAGGTACCTTCCCATA
NONE
OsAffx.20741.1.S1_at--743--6153Chr05:21067525..21067549 (25 bp)
GAGGTACCTTCCCATATACTTGAGG
NONE
OsAffx.20741.1.S1_at--474--331Chr10:3125984..3126008 (25 bp)
ATACTTGAGGGTATACTGTATCCAT
LOC_Os10g06160
OsAffx.20741.1.S1_at--463--1951Chr10:3125970..3125994 (25 bp)
ACTGTATCCATATATCTCACGACCC
LOC_Os10g06160
OsAffx.20741.1.S1_at--258--9671Chr10:3125957..3125978 (22 bp)
TCACGACCCCAAGGATAAGAGGCTG
LOC_Os10g06160
OsAffx.20741.1.S1_at--600--1071Chr10:3125657..3125681 (25 bp)
AGTGTGGGATGACAACAATTGACCT
LOC_Os10g06160
OsAffx.20741.1.S1_at--565--351Chr10:3125612..3125636 (25 bp)
ATGAACCATTCATCTTAGCCAATGA
LOC_Os10g06160
OsAffx.20741.1.S1_at--559--4791Chr10:3125530..3125554 (25 bp)
GCTCGACAAGCCAAAGTGCCACATG
LOC_Os10g06160
OsAffx.20741.1.S1_at--1004--7271Chr10:3125515..3125539 (25 bp)
GTGCCACATGGTTCTCCCAAGGAAA
LOC_Os10g06160
Target Sequence 
GAAACGATTCCTTACTGATCAGCCGATTTCCTCAATTCAGAGGTACCTTCCCATATACTTGAGGGTATACTGTATCCATA
TATCTCACGACCCCAAGGATAAGAGGCTGACTAGTGGAGGCGTAATGGTTGATGAGTGTGGGATGACAACAATTGACCTT
AACAACATTAGGTACTCAGATGAACCATTCATCTTAGCCAATGATGTAACACAAGTTTTCTATGTAAAGGACATGTGTAG
CAAACCAAAGAAGGGGAAAGGGCTCGACAAGCCAAAGTGCCACATGGTTCTCCCAAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis