Browse Element(s) Details


OsAffx.20695.1.S1_x_at

Description gb:NM_195104.1
DB_XREF= gi:37531567
TID=OsAffx.20695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0011A24.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g310502/11retrotransposon protein, putative, unclassified
LOC_Os04g052801/11retrotransposon protein, putative, unclassified
LOC_Os04g053101/11retrotransposon protein, putative, unclassified
LOC_Os10g062501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g235801/11hypothetical protein
LOC_Os10g061801/11hypothetical protein
LOC_Os10g094501/11retrotransposon protein, putative, unclassified
LOC_Os10g096001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g31000Os.47114.1.S1_x_at1/116+18030977..18040297retrotransposon protein, putative, unclassified
LOC_Os06g31010NANA6+18040939..18041874retrotransposon protein, putative, unclassified
LOC_Os06g31020NANA6+18045214..18051952retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31030NANA6+18054079..18056280retrotransposon protein, putative, unclassified
LOC_Os06g31040NANA6+18057942..18059264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31050OsAffx.20689.1.S1_x_at4/116+18060105..18063587retrotransposon protein, putative, unclassified
LOC_Os06g31050OsAffx.20673.1.S1_x_at2/116+18060105..18063587retrotransposon protein, putative, unclassified
LOC_Os06g31050OsAffx.20695.1.S1_x_at2/116+18060105..18063587retrotransposon protein, putative, unclassified
LOC_Os06g31050OsAffx.30496.1.S1_x_at1/116+18060105..18063587retrotransposon protein, putative, unclassified
LOC_Os06g31060Os.5517.1.S1_at11/116+18064905..18065748Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g31070Os.5918.1.S1_at8/116+18071226..18071904Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os06g31080Os.37083.2.S1_at1/116+18076804..18077130retrotransposon protein, putative, unclassified
LOC_Os06g31080Os.47130.4.A1_x_at1/116+18076804..18077130retrotransposon protein, putative, unclassified
LOC_Os06g31090Os.28593.1.S1_at9/116+18078028..18078822GAMYB-binding protein, putative, expressed
LOC_Os06g31100Os.5906.1.S1_at11/116+18080031..18085701GAMYB-binding protein, putative, expressed
LOC_Os06g31110OsAffx.27896.1.S1_at11/116+18086573..18087485hypothetical protein
LOC_Os06g31120NANA6+18088463..18090303retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20695.1.S1_x_at--275--5312Chr10:4871462..4871486 (25 bp)
GAAGGAGAACTCGCCGGCGCTAGAC
NONE
OsAffx.20695.1.S1_x_at--512--2552Chr10:4871469..4871493 (25 bp)
AACTCGCCGGCGCTAGACGGGTCGG
NONE
OsAffx.20695.1.S1_x_at--29--4592Chr10:4871478..4871502 (25 bp)
GCGCTAGACGGGTCGGCGGCGGAAA
NONE
OsAffx.20695.1.S1_x_at--870--7591Chr10:4848581..4848605 (25 bp)
GGGCACCTACGCGTAAAGGGCAACG
NONE
OsAffx.20695.1.S1_x_at--344--61915Chr10:3150375..3150399 (25 bp)
GAGGCGAACCCGTTGGTACTCACCA
LOC_Os10g06180
OsAffx.20695.1.S1_x_at--372--9912Chr10:4871547..4871571 (25 bp)
TACTCACCACTACACGAAACGATGC
NONE
OsAffx.20695.1.S1_x_at--374--1712Chr10:4871552..4871576 (25 bp)
ACCACTACACGAAACGATGCACGAC
NONE
OsAffx.20695.1.S1_x_at--439--9856Chr10:4848631..4848655 (25 bp)
TACACGAAACGATGCACGACGGCGG
NONE
OsAffx.20695.1.S1_x_at--513--1931Chr10:4848649..4848673 (25 bp)
ACGGCGGCCGGCGACAAAGAAGAAG
NONE
OsAffx.20695.1.S1_x_at--870--83313Chr10:4871605..4871629 (25 bp)
GGCGGCTCGGGTTAGCGGCGACGGC
NONE
OsAffx.20695.1.S1_x_at--894--9273Chr12:10912217..10912478 (25 bp)
TCCGGTGGTCGACGGCGCAAACGGA
NONE
Target Sequence 
GAAGGAGAACTCGCCGGCGCTAGACGGGTCGGCGGCGGAAACGGAGGGCACCTACGCGTAAAGGGCAACGAGGCGAACCC
GTTGGTACTCACCACTACACGAAACGATGCACGACGGCGGCCGGCGACAAAGAAGAAGGCGGCGGCGGCTCGGGTTAGCG
GCGACGGCGGCGCTCCGGTGGTCGACGGCGCAAACGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20695.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis