Browse Element(s) Details


Os.37083.2.S1_at

Description gb:NM_197278.1
DB_XREF= gi:37535915
TID=Os.37083.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37083 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0091N21.30), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g407502/11retrotransposon protein, putative, unclassified
LOC_Os03g595202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g333001/11retrotransposon protein, putative, unclassified
LOC_Os05g406701/11transposon protein, putative, unclassified
LOC_Os07g323301/11retrotransposon protein, putative, unclassified
LOC_Os01g506601/11retrotransposon protein, putative, unclassified
LOC_Os10g364501/11retrotransposon protein, putative, unclassified
LOC_Os06g408301/11retrotransposon protein, putative, unclassified
LOC_Os05g288901/11retrotransposon protein, putative, unclassified
LOC_Os12g365701/11retrotransposon protein, putative, unclassified
LOC_Os03g409801/11retrotransposon protein, putative, unclassified
LOC_Os02g224301/11retrotransposon protein, putative, unclassified
LOC_Os01g495001/11retrotransposon protein, putative, unclassified
LOC_Os06g303501/11retrotransposon protein, putative, unclassified
LOC_Os01g438301/11retrotransposon protein, putative, unclassified
LOC_Os07g303401/11retrotransposon protein, putative, unclassified
LOC_Os12g222841/11ABC-2 type transporter family protein, expressed
LOC_Os06g310801/11retrotransposon protein, putative, unclassified
LOC_Os08g358201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g328301/11retrotransposon protein, putative, unclassified
LOC_Os07g323001/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g40700Os.33019.1.S1_at11/115+23782547..23786320expressed protein
LOC_Os05g40710NANA5+23788310..23789791GRAS family transcription factor containing protein
LOC_Os05g40720OsAffx.15049.1.S1_at10/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40720Os.55837.1.S1_x_at1/115+23790971..23795072Glycosyl transferase family 8 protein
LOC_Os05g40730NANA5+23795611..23798327hypothetical protein
LOC_Os05g40740OsAffx.27264.1.S1_s_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40740OsAffx.27264.1.S1_at11/115+23800217..23802733L-ascorbate oxidase homolog precursor, putative, expressed
LOC_Os05g40750Os.37083.2.S1_at2/115+23804950..23806506retrotransposon protein, putative, unclassified
LOC_Os05g40760OsAffx.22940.1.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.3.S1_x_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_s_at11/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.5.S1_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760Os.35344.18.S1_x_at10/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.2.S1_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.22940.3.S1_x_at9/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40760OsAffx.31552.2.S1_at1/115+23807432..23813316Transposable element protein, putative, MuDR
LOC_Os05g40770Os.46287.1.S1_a_at11/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40770Os.52122.1.S1_at1/115+23816223..23822364Protein kinase domain containing protein, expressed
LOC_Os05g40780Os.39887.1.S1_at9/115+23824650..23827389expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0010025biological_processwax biosynthesis
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37083.2.S1_at--500--105516Chr11:18892668..18892692 (25 bp)
TTCTACCTACTTTTCTTCTGGGTGG
NONE
Os.37083.2.S1_at--1142--57320Chr12:8962014..8962033 (20 bp)
GACCTACCCTATCTTGACCAAAACT
NONE
Os.37083.2.S1_at--14--89319Chr11:18892708..18892732 (25 bp)
TGACCAAAACTTGGCTTGCACCTTC
NONE
Os.37083.2.S1_at--1008--107346Chr12:8972754..8972773 (20 bp)
TTGCACCTTCGCCTGGAAGCTAAAT
NONE
Os.37083.2.S1_at--799--53925Chr11:18892738..18892762 (25 bp)
GAAGCTAAATCACAACTTGTCCTTG
NONE
Os.37083.2.S1_at--570--25124Chr11:18892751..18892775 (25 bp)
AACTTGTCCTTGAGTGAGGCTCAGC
NONE
Os.37083.2.S1_at--357--87786Chr10:17162415..17162439 (25 bp)
TGTTACTCCCTCATTAATGGGCGGA
NONE
Os.37083.2.S1_at--197--104357Chr11:18892820..18892844 (25 bp)
TTAATGGGCGGAGATTTGCCATGGC
NONE
Os.37083.2.S1_at--755--83323Chr11:18892842..18892866 (25 bp)
GGCTGCTTTCCAAATGACCATCCGA
NONE
Os.37083.2.S1_at--228--58522Chr11:18892857..18892881 (25 bp)
GACCATCCGACGAGATGGGTCATAC
NONE
Os.37083.2.S1_at--663--47557Chr11:18893078..18893102 (25 bp)
GCTGACGTGCCAACTCCAGGAGTTC
LOC_Os11g32830
Target Sequence 
TTCTACCTACTTTTCTTCTGGGTGGGGACCTACCCTATCTTGACCAAAACTTGGCTTGCACCTTCGCCTGGAAGCTAAAT
CACAACTTGTCCTTGAGTGAGGCTCAGCGCCGTCNCTCGCCTGACACCGGGGATCTCCCTGTTACTCCCTCATTAATGGG
CGGAGATTTGCCATGGCTGCTTTCCAAATGACCATCCGACGAGATGGGTCATACCNACCTCCACTCCNCCGGANGCAGNT
GCANCGTGGNAGCACGGTTGTNTGCCGATGACGCGACCGGCGTCAGACCAGTCACAGACCGGTCATTCTTGTCCACCACG
TGTCAGTTNAGCATGCTACACGTCTGCCCTTCNTCATACAATGACTTCNTTGCAATGGTTGCGATGAAGCCTGGAATGTA
TCTGGCCGGGGCTGACGTGCCAACTCCAGGAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37083.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis