Browse Element(s) Details


Os.52122.1.S1_at

Description gb:AK064851.1
DB_XREF= gi:32974869
TID=Os.52122.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52122 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000H04, full insert sequence.
FL= gb:AK064851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1249011/11transporter, putative, expressed
LOC_Os05g407701/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12430NANA5+7124862..7125942retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12440OsAffx.4314.1.S1_at11/115+7128977..7129381expressed protein
LOC_Os05g12450OsAffx.26856.1.S1_at11/115+7131761..7133233UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g12460Os.53011.1.S1_at10/115+7137519..7139032expressed protein
LOC_Os05g12460Os.53011.1.S1_x_at10/115+7137519..7139032expressed protein
LOC_Os05g12474Os.53750.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474Os.35613.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_s_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_at3/115+7140943..7147653expressed protein
LOC_Os05g12490Os.52122.1.S1_at11/115+7150499..7155887transporter, putative, expressed
LOC_Os05g12500NANA5+7163380..7163658hypothetical protein
LOC_Os05g12510OsAffx.26857.1.S1_at11/115+7172070..7174357hypothetical protein
LOC_Os05g12524NANA5+7176206..7176920NA
LOC_Os05g12540OsAffx.26858.1.S1_at11/115+7178367..7178738hypothetical protein
LOC_Os05g12540OsAffx.17095.1.S1_at1/115+7178367..7178738hypothetical protein
LOC_Os05g12550OsAffx.4315.1.S1_at11/115+7179441..7182024expressed protein
LOC_Os05g12550Os.53111.1.S1_at1/115+7179441..7182024expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52122.1.S1_at--666--2771Chr05:7151072..7151096 (25 bp)
AAGAGGGCCTTAACTTCCATGTTGC
LOC_Os05g12490
Os.52122.1.S1_at--544--4631Chr05:7151049..7151073 (25 bp)
GCGATTGGCATGATCCTTGCTGTTA
LOC_Os05g12490
Os.52122.1.S1_at--317--5271Chr05:7151005..7151029 (25 bp)
GAATGCTTCATCGAAACCAGGAGGC
LOC_Os05g12490
Os.52122.1.S1_at--420--2331Chr05:7150980..7151004 (25 bp)
AAAGAGCGCCAGGTTTACTCAGCAC
LOC_Os05g12490
Os.52122.1.S1_at--739--6811Chr05:7150968..7150992 (25 bp)
GTTTACTCAGCACCCAGCGAGAAAA
LOC_Os05g12490
Os.52122.1.S1_at--358--5492Chr05:7150861..7150885 (25 bp)
GAACATCTTGAGGACCATGATCTGA
LOC_Os05g12490
Os.52122.1.S1_at--271--8651Chr05:7150768..7150792 (25 bp)
TGGGCAAACTGTCCTGGCTATACTT
LOC_Os05g12490
Os.52122.1.S1_at--238--5031Chr05:7150673..7150697 (25 bp)
GCAGTGCTGTGTAACTTGTGTTCCT
LOC_Os05g12490
Os.52122.1.S1_at--152--2331Chr05:7150648..7150672 (25 bp)
AAAGTTTTTATGTGCACCACCTGCA
LOC_Os05g12490
Os.52122.1.S1_at--785--2231Chr05:7150567..7150591 (25 bp)
AAATTGTGTCATTCATTCAGTCGAC
LOC_Os05g12490
Os.52122.1.S1_at--597--10531Chr05:7150552..7150576 (25 bp)
TTCAGTCGACAAGTTAGCAGCATTT
LOC_Os05g12490
Target Sequence 
AAGAGGGCCTTAACTTCCATGTTGCGATTGGCATGATCCTTGCTGTTATTGGCATGATTTGGTATGGGAATGCTTCATCG
AAACCAGGAGGCAAAGAGCGCCAGGTTTACTCAGCACCCAGCGAGAAAACACAGAAACACAATATACTGTCATCACAGTC
TGAGCTTGACCAGAAGGTCTGAAATACAATGTTGATGACTAGTGTTTTATTGAACATCTTGAGGACCATGATCTGATTTA
TTCTTTTTACACGTTTTTTAGATGCTTCTATAGAATTTGTAGGCTATAGCAGAAAGAGGGTACCTGGGCAAACTGTCCTG
GCTATACTTTTGNNGCGTATATGTCAACAAAAAGTAACTAGATGTTAATTTGAATTTTAATATTTCTTTAACTGCAAGAG
CAGTGCTGTGTAACTTGTGTTCCTAAAGTTTTTATGTGCACCACCTGCATGGGGTAAAAGTNCAAATGACTCTCCCCCTT
GTGTTGTCTTGGTTGTTTTGACAATAAATTGTGTCATTCATTCAGTCGACAAGTTAGCAGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52122.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis