Browse Element(s) Details


OsAffx.14661.1.S1_s_at

Description tigr:9633.m01113
TID=OsAffx.14661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF428419 At2g46220T3F17.13
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1247411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12410Os.28427.1.S1_x_at4/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.2.S1_x_at2/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410OsAffx.26865.1.S1_x_at1/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12420OsAffx.14659.1.S1_at10/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.3.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420Os.27455.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12430NANA5+7124862..7125942retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12440OsAffx.4314.1.S1_at11/115+7128977..7129381expressed protein
LOC_Os05g12450OsAffx.26856.1.S1_at11/115+7131761..7133233UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g12460Os.53011.1.S1_at10/115+7137519..7139032expressed protein
LOC_Os05g12460Os.53011.1.S1_x_at10/115+7137519..7139032expressed protein
LOC_Os05g12474Os.53750.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474Os.35613.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_s_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_at3/115+7140943..7147653expressed protein
LOC_Os05g12490Os.52122.1.S1_at11/115+7150499..7155887transporter, putative, expressed
LOC_Os05g12500NANA5+7163380..7163658hypothetical protein
LOC_Os05g12510OsAffx.26857.1.S1_at11/115+7172070..7174357hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14661.1.S1_s_at--712--831Chr05:7146872..7146896 (25 bp)
ATGGCATTCCTAGAGTTCTCTCGGA
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--172--1351Chr05:7146883..7146907 (25 bp)
AGAGTTCTCTCGGATGGCCCTGGCA
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--581--8411Chr05:7146898..7146922 (25 bp)
GGCCCTGGCAGATTTGAAGGCACCT
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--1122--9171Chr05:7146978..7147002 (25 bp)
TGCCAAGAACACACCAACGAAATTT
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--641--2251Chr05:7146997..7147021 (25 bp)
AAATTTAAGGTCTTGCCAGTCGTAG
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--1158--4411Chr05:7147011..7147035 (25 bp)
GCCAGTCGTAGAGCTCATCAGATCA
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--258--411Chr05:7147027..7147051 (25 bp)
ATCAGATCACTTGGATGCCCATCTA
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--325--3271Chr05:7147061..7147085 (25 bp)
CAACATATTTTGAGACGTCGTCCCT
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--160--5991Chr05:7147072..7147096 (25 bp)
GAGACGTCGTCCCTACAGCTAATAT
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--964--1571Chr05:7147088..7147112 (25 bp)
AGCTAATATCGCTCTTGCCATTCTG
LOC_Os05g12474
OsAffx.14661.1.S1_s_at--154--1211Chr05:7147359..7147383 (25 bp)
AGTTTTGTAAGCTGTATATTGCCCC
LOC_Os05g12474
Target Sequence 
ATGGCATTCCTAGAGTTCTCTCGGATGGCCCTGGCAGATTTGAAGGCACCTCAGAGTATAAGTTTGACAAGAATGGGAAG
ATCTATGAGCATAAGGTTGATAATGTTGCCAAGAACACACCAACGAAATTTAAGGTCTTGCCAGTCGTAGAGCTCATCAG
ATCACTTGGATGCCCATCTACTCCAAAACCAACATATTTTGAGACGTCGTCCCTACAGCTAATATCGCTCTTGCCATTCT
GCTCAAAGTTTCTGTCTAGGAATGTAGGCATAGCTGAAGTTATTCCAAGATCTTGGCTGAGTTTTGTAAGCTGTATATTG
CCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14661.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis