Browse Element(s) Details


OsAffx.14659.1.S1_at

Description tigr:9633.m01108
TID=OsAffx.14659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1242010/11hypothetical protein
LOC_Os07g295403/11retrotransposon protein, putative, unclassified
LOC_Os05g153502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12380OsAffx.14658.1.S1_at11/115+7103269..7106467expressed protein
LOC_Os05g12390OsAffx.16290.1.S1_at11/115+7110340..7111502hypothetical protein
LOC_Os05g12400Os.49997.1.S1_at11/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12400Os.28427.2.S1_x_at2/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.1.S1_x_at4/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.2.S1_x_at2/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410OsAffx.26865.1.S1_x_at1/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12420OsAffx.14659.1.S1_at10/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.3.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420Os.27455.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12430NANA5+7124862..7125942retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12440OsAffx.4314.1.S1_at11/115+7128977..7129381expressed protein
LOC_Os05g12450OsAffx.26856.1.S1_at11/115+7131761..7133233UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g12460Os.53011.1.S1_at10/115+7137519..7139032expressed protein
LOC_Os05g12460Os.53011.1.S1_x_at10/115+7137519..7139032expressed protein
LOC_Os05g12474Os.53750.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474Os.35613.1.S1_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_s_at11/115+7140943..7147653expressed protein
LOC_Os05g12474OsAffx.14661.1.S1_at3/115+7140943..7147653expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14659.1.S1_at--264--3373Chr07:17340805..17340824 (20 bp)
CACCATATTGTGTGGATTAGTCCCG
LOC_Os07g29540
OsAffx.14659.1.S1_at--746--157Chr12:7365860..7366001 (25 bp)
ATTAGTCCCGGATTGTGGTTCTGTG
NONE
OsAffx.14659.1.S1_at--33--7258Chr12:7365984..7366005 (22 bp)
GTCCCGGATTGTGGTTCTGTGATTG
NONE
OsAffx.14659.1.S1_at--167--10618Chr12:7365878..7365902 (25 bp)
TTCTGTGATTGCTCGGTTTGACGGG
NONE
OsAffx.14659.1.S1_at--830--10031Chr05:7118712..7118736 (25 bp)
TAGTTATTCCGGATCGTGGTTCTAT
LOC_Os05g12420
OsAffx.14659.1.S1_at--228--511Chr05:7118724..7118748 (25 bp)
ATCGTGGTTCTATGATTGCTCGGTG
LOC_Os05g12420
OsAffx.14659.1.S1_at--874--10111Chr05:7118734..7118758 (25 bp)
TATGATTGCTCGGTGTGACGGATCG
LOC_Os05g12420
OsAffx.14659.1.S1_at--952--4111NONE
CGCATCCGACCTTGGAATTGATAGT
NONE
OsAffx.14659.1.S1_at--281--7871Chr05:7120027..7120051 (25 bp)
GGTATTAAAGGACTATCAACAATTC
LOC_Os05g12420
OsAffx.14659.1.S1_at--54--10172Chr05:7121224..7121298 (25 bp)
TATACTGCGGATAAGAGGTATCGGA
LOC_Os05g12420
OsAffx.14659.1.S1_at--321--8312Chr05:7121377..7121401 (25 bp)
GGCTACGATCAAGATCGACAGAGTT
LOC_Os05g12420
Target Sequence 
CACCATATTGTGTGGATTAGTCCCGGATTGTGGTTCTGTGATTGCTCGGTTTGACGGGTCGGAGTCCAGGGGGCTTCGGA
TCATTCTCACCCTCACCACTTGGTCGCATCCAACCTTGGTAGGTATAAAGCTAGTTATTCCGGATCGTGGTTCTATGATT
GCTCGGTGTGACGGATCGGAGTCCGGGAGGCTTCGGATTGTTCTCACCCTCACCACTTCATCGCATCCGACCTTGGAATT
GATAGTTATATTTGGTATTAAAGGACTATCAACAATTCCGAAACATGAGAAGGATGATAATATTAGAGTAGTATCTGGTA
GTTTAAGCGTGGTGTCTAGATTATTGGGTATCATTATTTGGGGTTATATACTGCGGATAAGAGGTATCGGAGATGAAGAT
AAAATTGAAGCGGAATCCAAGATGGAGATCATTCCGGAAACAGAGCAAGAATCGGCTAAAGTCCGAATCGGCTACGATCA
AGATCGACAGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis