Browse Element(s) Details


OsAffx.14658.1.S1_at

Description tigr:9633.m01104
TID=OsAffx.14658.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1238011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12350NANA5+7074041..7078721hypothetical protein
LOC_Os05g12360NANA5+7085977..7090113retrotransposon protein, putative, unclassified
LOC_Os05g12370Os.51419.1.S1_at11/115+7092499..7092896expressed protein
LOC_Os05g12380OsAffx.14658.1.S1_at11/115+7103269..7106467expressed protein
LOC_Os05g12390OsAffx.16290.1.S1_at11/115+7110340..7111502hypothetical protein
LOC_Os05g12400Os.49997.1.S1_at11/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12400Os.28427.2.S1_x_at2/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.1.S1_x_at4/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.2.S1_x_at2/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410OsAffx.26865.1.S1_x_at1/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12420OsAffx.14659.1.S1_at10/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.3.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420Os.27455.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12430NANA5+7124862..7125942retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12440OsAffx.4314.1.S1_at11/115+7128977..7129381expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14658.1.S1_at--586--2191Chr05:7105924..7105948 (25 bp)
ACAATGGTTTCTCAAGGTCGCGGTC
LOC_Os05g12380
OsAffx.14658.1.S1_at--171--6511Chr05:7105969..7105993 (25 bp)
GATAGGCTGCCATTACTGTCAGGAC
LOC_Os05g12380
OsAffx.14658.1.S1_at--108--7951Chr05:7106012..7106036 (25 bp)
GGATTTGAACACCTCTATCGCAGGA
LOC_Os05g12380
OsAffx.14658.1.S1_at--306--2371Chr05:7106078..7106102 (25 bp)
AAACCAGCTGTTCTCTTCAGGACTT
LOC_Os05g12380
OsAffx.14658.1.S1_at--458--9971Chr05:7106152..7106176 (25 bp)
TAGCCGGGTTTTGCCTTACAAGAAG
LOC_Os05g12380
OsAffx.14658.1.S1_at--1054--3931Chr05:7106250..7106274 (25 bp)
CGGCACTAGGTGGTTCGCGGAACTC
LOC_Os05g12380
OsAffx.14658.1.S1_at--859--8171Chr05:7106268..7106292 (25 bp)
GGAACTCTGCGAATCTGAAGCTCTT
LOC_Os05g12380
OsAffx.14658.1.S1_at--447--311Chr05:7106295..7106319 (25 bp)
ATACCTACAGCATTTCGTCCATGAG
LOC_Os05g12380
OsAffx.14658.1.S1_at--1126--691Chr05:7106315..7106339 (25 bp)
ATGAGACCTGATGGCCATGTTGGGC
LOC_Os05g12380
OsAffx.14658.1.S1_at--353--231Chr05:7106331..7106355 (25 bp)
ATGTTGGGCCTTACAGGTATCCATT
LOC_Os05g12380
OsAffx.14658.1.S1_at--895--31Chr05:7106403..7106427 (25 bp)
ATTGGTGTGTACCAGGCCCTATCGA
LOC_Os05g12380
Target Sequence 
ACAATGGTTTCTCAAGGTCGCGGTCTACTGGGAGAATGATAGGGTGATAGGCTGCCATTACTGTCAGGACAAGAAGTTAC
GTGAACTTGGATTTGAACACCTCTATCGCAGGACTCTGCAACAAATCTTCAGATTCATTGCATCTTCAAACCACAAACCA
GCTGTTCTCTTCAGGACTTGGGCACCCGATCACTTCGAGAACGCGGAATGGTTCAACGGGGGAACTTGTAGCCGGGTTTT
GCCTTACAAGAAGGGAGAGTACAGCGGAAAAGACATGGATCGTATCATGAGACCAATTGAACTTGAGGAGTTCAGGAATG
CCATGGCGGCACTAGGTGGTTCGCGGAACTCTGCGAATCTGAAGCTCTTGGATACCTACAGCATTTCGTCCATGAGACCT
GATGGCCATGTTGGGCCTTACAGGTATCCATTCCTGAAAGGTGACAAGGATGCCAAATCAGTTCAGAATGATTGCCTGCA
TTGGTGTGTACCAGGCCCTATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis