Browse Element(s) Details


Os.51419.1.S1_at

Description gb:AK062760.1
DB_XREF= gi:32972778
TID=Os.51419.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51419 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G12, full insert sequence.
FL= gb:AK062760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1237011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12330OsAffx.14657.1.S1_at11/115+7066396..7067821esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os05g12340Os.1709.1.S1_x_at11/115+7069879..7073434retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12350NANA5+7074041..7078721hypothetical protein
LOC_Os05g12360NANA5+7085977..7090113retrotransposon protein, putative, unclassified
LOC_Os05g12370Os.51419.1.S1_at11/115+7092499..7092896expressed protein
LOC_Os05g12380OsAffx.14658.1.S1_at11/115+7103269..7106467expressed protein
LOC_Os05g12390OsAffx.16290.1.S1_at11/115+7110340..7111502hypothetical protein
LOC_Os05g12400Os.49997.1.S1_at11/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12400Os.28427.2.S1_x_at2/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.1.S1_x_at4/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.2.S1_x_at2/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410OsAffx.26865.1.S1_x_at1/115+7115948..7116999BURP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51419.1.S1_at--1115--4671Chr05:7092530..7092554 (25 bp)
GCGGTTGCTCGAACCAGAGGCAGAC
LOC_Os05g12370
Os.51419.1.S1_at--429--2471Chr05:7092608..7092632 (25 bp)
AACACAAGCCACACGGCAGCGCGGG
LOC_Os05g12370
Os.51419.1.S1_at--508--9351Chr05:7092635..7092659 (25 bp)
TCGCATCCTCATGCTGGAGTGCCAG
LOC_Os05g12370
Os.51419.1.S1_at--734--5831Chr05:7092702..7092726 (25 bp)
GACCTCGCATCCTTGTGTTTGGTTG
LOC_Os05g12370
Os.51419.1.S1_at--23--1871Chr05:7092766..7092790 (25 bp)
ACGACGACAGAAGGCACGCAAGCCG
LOC_Os05g12370
Os.51419.1.S1_at--88--5171Chr05:7092783..7092807 (25 bp)
GCAAGCCGCAGAGGACGCGACGATA
LOC_Os05g12370
Os.51419.1.S1_at--428--4611Chr05:7092799..7092823 (25 bp)
GCGACGATACAATCCTTGCGTTTCA
LOC_Os05g12370
Os.51419.1.S1_at--884--3032Chr05:7092809..7092833 (25 bp)
AATCCTTGCGTTTCATTCTCCGATC
LOC_Os05g12370
Os.51419.1.S1_at--263--9291Chr05:7092827..7092851 (25 bp)
TCCGATCCTGTCCAAATTTCTGTAA
LOC_Os05g12370
Os.51419.1.S1_at--600--3851Chr05:7092846..7092870 (25 bp)
CTGTAATTTTGGATTGGATGGACTC
LOC_Os05g12370
Os.51419.1.S1_at--249--8131Chr05:7092865..7092889 (25 bp)
GGACTCAATGCATGTTTATATTCTG
LOC_Os05g12370
Target Sequence 
GCGGTTGCTCGAACCAGAGGCAGACGGGTGGCTGGAGTGGCTGGCGGTGGCTCCGCGGCTCTCCGGTGTGACGACGACAA
CACAAGCCACACGGCAGCGCGGGCCTCGCATCCTCATGCTGGAGTGCCAGCGACGGCTCCGCGGCTTCGGCTCGACGGCG
ACACAAGCCGCAGACCTCGCATCCTTGTGTTTGGTTGGAGTGGCCGGCGGCGGCGCGGCTGTCGGGCGCCGCCGCGACGA
CGACAGAAGGCACGCAAGCCGCAGAGGACGCGACGATACAATCCTTGCGTTTCATTCTCCGATCCTGTCCAAATTTCTGT
AATTTTGGATTGGATGGACTCAATGCATGTTTATATTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis