Browse Element(s) Details


OsAffx.16290.1.S1_at

Description tigr:9633.m01105
TID=OsAffx.16290.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1239011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g12360NANA5+7085977..7090113retrotransposon protein, putative, unclassified
LOC_Os05g12370Os.51419.1.S1_at11/115+7092499..7092896expressed protein
LOC_Os05g12380OsAffx.14658.1.S1_at11/115+7103269..7106467expressed protein
LOC_Os05g12390OsAffx.16290.1.S1_at11/115+7110340..7111502hypothetical protein
LOC_Os05g12400Os.49997.1.S1_at11/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12400Os.28427.2.S1_x_at2/115+7113342..7114865BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.1.S1_x_at4/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410Os.28427.2.S1_x_at2/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12410OsAffx.26865.1.S1_x_at1/115+7115948..7116999BURP domain containing protein, expressed
LOC_Os05g12420OsAffx.14659.1.S1_at10/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.3.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420Os.27455.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12420OsAffx.30032.1.S1_at1/115+7118021..7121656hypothetical protein
LOC_Os05g12430NANA5+7124862..7125942retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g12440OsAffx.4314.1.S1_at11/115+7128977..7129381expressed protein
LOC_Os05g12450OsAffx.26856.1.S1_at11/115+7131761..7133233UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16290.1.S1_at--951--5352Chr07:9454736..9454760 (25 bp)
GAAGATGATATTGCCATATCAGACA
NONE
OsAffx.16290.1.S1_at--43--731Chr05:7111420..7111444 (25 bp)
ATGATTTTATTATTGAGGAGGTCCA
LOC_Os05g12390
OsAffx.16290.1.S1_at--642--6172Chr07:9454694..9454718 (25 bp)
GAGGAGGTCCAAAATGAATCAGATG
NONE
OsAffx.16290.1.S1_at--709--5232Chr07:9454679..9454703 (25 bp)
GAATCAGATGACCAAGAAATTGAGA
NONE
OsAffx.16290.1.S1_at--175--1211Chr05:7111366..7111390 (25 bp)
AGTTTGTTTCAAATGAGCAATCAAC
LOC_Os05g12390
OsAffx.16290.1.S1_at--853--5952Chr07:9454640..9454664 (25 bp)
GAGCAATCAACAGAGGAAGCTATGT
NONE
OsAffx.16290.1.S1_at--568--6192Chr07:9454628..9454652 (25 bp)
GAGGAAGCTATGTTACAAGAACCAA
NONE
OsAffx.16290.1.S1_at--50--2891Chr05:7111313..7111337 (25 bp)
AAGGGAATTCTATTTGATAGTGCAA
LOC_Os05g12390
OsAffx.16290.1.S1_at--293--5011Chr05:7110389..7110413 (25 bp)
GCAGGCAGATCCGTGACCTGGAGCT
LOC_Os05g12390
OsAffx.16290.1.S1_at--656--1291Chr05:7110383..7110407 (25 bp)
AGATCCGTGACCTGGAGCTGCAGAT
LOC_Os05g12390
OsAffx.16290.1.S1_at--559--8931Chr05:7110376..7110400 (25 bp)
TGACCTGGAGCTGCAGATTCAGGCC
LOC_Os05g12390
Target Sequence 
GAAGATGATATTGCCATATCAGACAAAGATGATTTTATTATTGAGGAGGTCCAAAATGAATCAGATGACCAAGAAATTGA
GAAGTTTGTTTCAAATGAGCAATCAACAGAGGAAGCTATGTTACAAGAACCAAAGAAGGGAATTCTATTTGATAGTGCAA
GGGGCGGCGCGGCGTCGGCGGCGGCGGCGGCGGAGGACGACGCCGGCGAGGAGGGCACGGCGGCGCTGCTGCGGCGGAGG
CTGCTGGTGGGGGAGGCGGCGGCGAACCTGGAGGAGGAGGTGGGCACCCTGGAGCGCGCGCTGGCCGTGGCCGTGGCGGA
GCGGGCGGCGGTGGAGGCGCGGAGGCGGGATGCCGAGGCCCGGGCCGACGACGCCGAGGCGCGGCTGCTCGCGGCGGAGG
AGGAGAAGGACGCGCGCGCCGAGGAGCTCGTGCTCGCGGCGGCGAAGCGCAGGCAGATCCGTGACCTGGAGCTGCAGATT
CAGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16290.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis