Browse Element(s) Details


OsAffx.26865.1.S1_x_at

Description tigr:9633.m01165
TID=OsAffx.26865.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BURP domain-containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1349011/11BURP domain containing protein
LOC_Os05g124101/11BURP domain containing protein, expressed
LOC_Os05g126301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13440Os.37726.1.A1_at11/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_a_at6/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_x_at4/115+7434895..7440216expressed protein
LOC_Os05g13450OsAffx.26864.1.S1_at11/115+7441734..7445321hypothetical protein
LOC_Os05g13460NANA5+7446701..7451097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13470OsAffx.4323.1.S1_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13470OsAffx.4323.2.S1_s_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13480OsAffx.4324.1.S1_at11/115+7455783..7456355hypothetical protein
LOC_Os05g13490OsAffx.26865.1.S1_x_at11/115+7457337..7458666BURP domain containing protein
LOC_Os05g13490Os.28427.2.S1_x_at1/115+7457337..7458666BURP domain containing protein
LOC_Os05g13500OsAffx.14671.2.S1_at10/115+7461250..7463093hypothetical protein
LOC_Os05g13510OsAffx.7916.1.S1_at6/115+7465943..7470265retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g13520Os.7232.1.S1_at10/115+7472015..7477633ABC-2 type transporter family protein, expressed
LOC_Os05g13530OsAffx.24469.1.S1_x_at1/115+7478600..7479155hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004650molecular_functionpolygalacturonase activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26865.1.S1_x_at--296--5851Chr05:7457738..7457762 (25 bp)
GACCAGGCCAAGCACTGCGTGACGT
LOC_Os05g13490
OsAffx.26865.1.S1_x_at--177--3491Chr05:7457735..7457759 (25 bp)
CAGGCCAAGCACTGCGTGACGTCGC
LOC_Os05g13490
OsAffx.26865.1.S1_x_at--310--7171Chr05:7457654..7457678 (25 bp)
GTCTCCACGGAGGTGATCGGCACGG
LOC_Os05g13490
OsAffx.26865.1.S1_x_at--757--7351Chr05:7457588..7457612 (25 bp)
GTGAAGCCCGTCGTGTCTGTCTCCG
LOC_Os05g13490
OsAffx.26865.1.S1_x_at--353--9431Chr05:7457578..7457602 (25 bp)
TCGTGTCTGTCTCCGGCGGCAACAT
LOC_Os05g13490
OsAffx.26865.1.S1_x_at--95--9511Chr05:7457569..7457593 (25 bp)
TCTCCGGCGGCAACATGGTGACGTG
LOC_Os05g13490
OsAffx.26865.1.S1_x_at--449--8611Chr05:7457554..7457578 (25 bp)
TGGTGACGTGCCACGGGATGCCCTA
LOC_Os05g13490
OsAffx.26865.1.S1_x_at--706--1832Chr03:7447741..7447760 (20 bp)
ACGCGGTGACGCTCGCCGGTGCCGA
NONE
OsAffx.26865.1.S1_x_at--369--7291Chr05:7457467..7457491 (25 bp)
GTGCCGATGGGACCCGGGCGGAGGC
LOC_Os05g13490
OsAffx.26865.1.S1_x_at--648--4631Chr05:7457399..7457423 (25 bp)
GCGTACGAGAGGGTCGGCGTGGCGG
LOC_Os05g13490
OsAffx.26865.1.S1_x_at--81--8093Chr05:7230407..7230546 (25 bp)
GGAGCGTGCCGGTGTGCCACATCAT
LOC_Os05g12630
Target Sequence 
GACCAGGCCAAGCACTGCGTGACGTCGCTCGAGTCCATGGTCGAGTTCGCCGCCGCCAGCCTCGGCACCCGCGACATCCG
CGCCGTCTCCACGGAGGTGATCGGCACGGGGGCGGCGGAGACGCCGAGGCAGGAGTACACGGTGGAGGCCGTGAAGCCCG
TCGTGTCTGTCTCCGGCGGCAACATGGTGACGTGCCACGGGATGCCCTACGCGTACGCCGTGTTCGGGTGCCACACGACC
ACGGCCACCGCGTACGCGGTGACGCTCGCCGGTGCCGATGGGACCCGGGCGGAGGCGCTCGCGACGTGCCACGGCGACGC
GTTCCCCGGCGTGGCGGAGGCGTACGAGAGGGTCGGCGTGGCGGCCGGGAGCGTGCCGGTGTGCCACATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26865.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis