Browse Element(s) Details


OsAffx.4323.2.S1_s_at

Description tigr:9631.m00520
TID=OsAffx.4323.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1347011/11hypothetical protein
LOC_Os03g0597011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13420Os.30055.1.S1_x_at11/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_a_at7/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_x_at5/115+7425652..7429603expressed protein
LOC_Os05g13430OsAffx.4322.1.S1_x_at11/115+7430044..7431337hypothetical protein
LOC_Os05g13440Os.37726.1.A1_at11/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_a_at6/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_x_at4/115+7434895..7440216expressed protein
LOC_Os05g13450OsAffx.26864.1.S1_at11/115+7441734..7445321hypothetical protein
LOC_Os05g13460NANA5+7446701..7451097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13470OsAffx.4323.1.S1_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13470OsAffx.4323.2.S1_s_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13480OsAffx.4324.1.S1_at11/115+7455783..7456355hypothetical protein
LOC_Os05g13490OsAffx.26865.1.S1_x_at11/115+7457337..7458666BURP domain containing protein
LOC_Os05g13490Os.28427.2.S1_x_at1/115+7457337..7458666BURP domain containing protein
LOC_Os05g13500OsAffx.14671.2.S1_at10/115+7461250..7463093hypothetical protein
LOC_Os05g13510OsAffx.7916.1.S1_at6/115+7465943..7470265retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g13520Os.7232.1.S1_at10/115+7472015..7477633ABC-2 type transporter family protein, expressed
LOC_Os05g13530OsAffx.24469.1.S1_x_at1/115+7478600..7479155hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4323.2.S1_s_at--444--4372Chr05:7452625..7452649 (25 bp)
CCAATTCGTTACACTGACACTTTTG
LOC_Os05g13470
OsAffx.4323.2.S1_s_at--1119--3132Chr05:7452623..7452647 (25 bp)
AATTCGTTACACTGACACTTTTGCA
LOC_Os05g13470
OsAffx.4323.2.S1_s_at--88--112Chr05:7452622..7452646 (25 bp)
ATTCGTTACACTGACACTTTTGCAA
LOC_Os05g13470
OsAffx.4323.2.S1_s_at--887--10613Chr04:26865866..26865885 (20 bp)
TTCGTTACACTGACACTTTTGCAAG
NONE
OsAffx.4323.2.S1_s_at--809--9393Chr04:26865866..26865885 (20 bp)
TCGTTACACTGACACTTTTGCAAGT
NONE
OsAffx.4323.2.S1_s_at--1160--6752Chr05:7452618..7452642 (25 bp)
GTTACACTGACACTTTTGCAAGTGG
LOC_Os05g13470
OsAffx.4323.2.S1_s_at--1048--9854Chr04:26865866..26865913 (25 bp)
TACACTGACACTTTTGCAAGTGGGA
NONE
OsAffx.4323.2.S1_s_at--533--3332Chr05:7452614..7452638 (25 bp)
CACTGACACTTTTGCAAGTGGGACA
LOC_Os05g13470
OsAffx.4323.2.S1_s_at--982--10672Chr05:7452570..7452594 (25 bp)
TTGAGAAGGAGTTTGAAAGAGCATT
LOC_Os05g13470
OsAffx.4323.2.S1_s_at--912--8132Chr05:7452449..7452473 (25 bp)
GGAAAAGGAAACTGCGAATCCCTCA
LOC_Os05g13470
OsAffx.4323.2.S1_s_at--193--2312Chr05:7452446..7452470 (25 bp)
AAAGGAAACTGCGAATCCCTCAAAG
LOC_Os05g13470
Target Sequence 
CCAATTCGTTACACTGACACTTTTGCAAGTGGGACAATAGCACTTGAGAAGGAACTTGAGAAGGAGTTTGAAAGAGCATT
TGAGCAAAGTGATATTGCGAACGTAACAAAAACGCTTGAAGAGAAGTGGGCGGAACAAGTCAGGAAAAGGAAACTGCGAA
TCCCTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4323.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis