Browse Element(s) Details


Os.30055.1.S1_x_at

Description gb:AK070757.1
DB_XREF= gi:32980780
TID=Os.30055.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064E04, full insert sequence.
FL= gb:AK070757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1342011/11expressed protein
LOC_Os03g487101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13370Os.53632.1.S1_at11/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13370Os.52150.1.S1_at1/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13380Os.51507.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13380OsAffx.25367.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13390Os.17320.1.S2_at11/115+7411639..7417618expressed protein
LOC_Os05g13390Os.17320.1.S1_at11/115+7411639..7417618expressed protein
LOC_Os05g13400NANA5+7421842..7423178hypothetical protein
LOC_Os05g13410NANA5+7423842..7425258hypothetical protein
LOC_Os05g13420Os.30055.1.S1_x_at11/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_a_at7/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_x_at5/115+7425652..7429603expressed protein
LOC_Os05g13430OsAffx.4322.1.S1_x_at11/115+7430044..7431337hypothetical protein
LOC_Os05g13440Os.37726.1.A1_at11/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_a_at6/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_x_at4/115+7434895..7440216expressed protein
LOC_Os05g13450OsAffx.26864.1.S1_at11/115+7441734..7445321hypothetical protein
LOC_Os05g13460NANA5+7446701..7451097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13470OsAffx.4323.1.S1_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13470OsAffx.4323.2.S1_s_at11/115+7451909..7455013hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30055.1.S1_x_at--788--3691Chr05:7426130..7426154 (25 bp)
CTACGAGTACCTCACCTACTTTGAG
LOC_Os05g13420
Os.30055.1.S1_x_at--742--9351Chr05:7425972..7425996 (25 bp)
TCGACATCGGATGGATCACCCGCAA
LOC_Os05g13420
Os.30055.1.S1_x_at--962--1111Chr05:7425915..7425939 (25 bp)
AGTGCGACGACTCCAAGAAATGCCG
LOC_Os05g13420
Os.30055.1.S1_x_at--967--3331Chr05:7425872..7425896 (25 bp)
CACGGCTGCCGTGTGGTTTCAGGTT
LOC_Os05g13420
Os.30055.1.S1_x_at--309--8571Chr05:7425859..7425883 (25 bp)
TGGTTTCAGGTTTGACGTGTTCCTC
LOC_Os05g13420
Os.30055.1.S1_x_at--442--3691Chr05:7425832..7425856 (25 bp)
CTTTGTGATTCCGAGCTGTTTGTGT
LOC_Os05g13420
Os.30055.1.S1_x_at--606--1612Chr05:7425819..7425843 (25 bp)
AGCTGTTTGTGTTCGATAGGTTCTT
LOC_Os05g13420
Os.30055.1.S1_x_at--852--7871Chr05:7425801..7425825 (25 bp)
GGTTCTTGATTTAGGCTTACTGGGT
LOC_Os05g13420
Os.30055.1.S1_x_at--318--7771Chr05:7425779..7425803 (25 bp)
GGTGCTGGTTTTGCTTGCCAAATTA
LOC_Os05g13420
Os.30055.1.S1_x_at--572--5591Chr05:7425743..7425767 (25 bp)
GAAATTAATCTGCTGCCAAGTAACA
LOC_Os05g13420
Os.30055.1.S1_x_at--160--3971Chr05:7425702..7425726 (25 bp)
CGGATTGTGTTTTTGTGCCGTCAAT
LOC_Os05g13420
Target Sequence 
CTACGAGTACCTCACCTACTTTGAGGCCCGCGTCGTGGGGCTCCTCCGCTACGGCTCTCTCACCGACCTTTCCGGGGTCA
AGGTCCGCCGCTTCCTCGTCTGGTTCGACGTCATCCGAGTCAAGGTNGACCTCCCGCCGCCCCCGCANTANGTNTACCTC
GACATCGGATGGATCACCCGCAAGCTTCCTGCCGACGAGTTCGAGTCCCCCCACAAGTGCGACGACTCCAAGAAATGCCG
CCTNTNGTCCGCGCTCGCCACGGCTGCCGTGTGGTTTCAGGTTTGACGTGTTCCTCCCCTTTGTGATTCCGAGCTGTTTG
TGTTCGATAGGTTCTTGATTTAGGCTTACTGGGTGCTGGTTTTGCTTGCCAAATTAGTCTCTTGTTAGAAATTAATCTGC
TGCCAAGTAACAAGCGAATTTAATTTCTCGGATTGTGTTTTTGTGCCGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30055.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis