Browse Element(s) Details


Os.53632.1.S1_at

Description gb:AK073669.1
DB_XREF= gi:32983692
TID=Os.53632.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033052F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033052F18, full insert sequence.
FL= gb:AK073669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1337011/11rhomboid family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13330Os.16585.1.S1_at11/115+7377797..7382612Per1-like family protein, expressed
LOC_Os05g13340OsAffx.14668.1.S1_at11/115+7385664..7386168hypothetical protein
LOC_Os05g13350OsAffx.14669.1.S1_at11/115+7388058..7388423hypothetical protein
LOC_Os05g13350OsAffx.887.1.S1_x_at1/115+7388058..7388423hypothetical protein
LOC_Os05g13360OsAffx.14670.1.S1_at11/115+7394699..7395970expressed protein
LOC_Os05g13370Os.53632.1.S1_at11/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13370Os.52150.1.S1_at1/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13380Os.51507.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13380OsAffx.25367.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13390Os.17320.1.S2_at11/115+7411639..7417618expressed protein
LOC_Os05g13390Os.17320.1.S1_at11/115+7411639..7417618expressed protein
LOC_Os05g13400NANA5+7421842..7423178hypothetical protein
LOC_Os05g13410NANA5+7423842..7425258hypothetical protein
LOC_Os05g13420Os.30055.1.S1_x_at11/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_a_at7/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_x_at5/115+7425652..7429603expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53632.1.S1_at--377--231Chr05:7397891..7397915 (25 bp)
ATATTGCCCATCTATCTGGTGCTTT
LOC_Os05g13370
Os.53632.1.S1_at--1090--491Chr05:7397865..7397889 (25 bp)
ATCGGTGCTGCATTAGTGTTCCTGA
LOC_Os05g13370
Os.53632.1.S1_at--142--9831Chr05:7397840..7397864 (25 bp)
TAAATCGTATCCCTTTTCCATCTGA
LOC_Os05g13370
Os.53632.1.S1_at--1137--4812Chr09:15295712..15295733 (22 bp)
GCTAATTTATTCTCCATTGTCCAAA
NONE
Os.53632.1.S1_at--582--10471Chr05:7397631..7397655 (25 bp)
TTAAGTTCCACTTACGATACCTCGG
LOC_Os05g13370
Os.53632.1.S1_at--1023--4831Chr05:7397593..7397617 (25 bp)
GCTAAGTGTACTGCTGTTCCCAAAA
LOC_Os05g13370
Os.53632.1.S1_at--625--6551Chr05:7397551..7397575 (25 bp)
GATTATCACTTTCTTGTGTCCGAGA
LOC_Os05g13370
Os.53632.1.S1_at--1026--911Chr05:7397514..7397538 (25 bp)
AGGCTTCCAGCCGTTATCAGACAGG
LOC_Os05g13370
Os.53632.1.S1_at--671--6011Chr05:7397448..7397472 (25 bp)
GAGAGAATCACATCCCTTTGCATGG
LOC_Os05g13370
Os.53632.1.S1_at--267--4311Chr05:7397434..7397458 (25 bp)
CCTTTGCATGGACTACTGTTCTGTA
LOC_Os05g13370
Os.53632.1.S1_at--432--271Chr05:7397410..7397434 (25 bp)
ATATGTCTTGGTTTGCAGTCCAGAA
LOC_Os05g13370
Target Sequence 
ATATTGCCCATCTATCTGGTGCTTTGATCGGTGCTGCATTAGTGTTCCTGATAAATCGTATCCCTTTTCCATCTGATGGT
GATAGTTCAAAATCTTCAAAGGATACCAGAGAAAAAAGAAGCTAATTTATTCTCCATTGTCCAAATTAAAACGGCCACTC
TAACAAAATTAACCCAATGCATTTTACTTTCCTTGATAGTTCTTTGTGTGCAAAGTCAGCTTAGTTCTGGTTTCTATTTG
AAAAGAAGTCCTATGGAAGCTTAAGTTCCACTTACGATACCTCGGAATCATTTCAAGGGCTAAGTGTACTGCTGTTCCCA
AAAGGAATAAAAGAAATAAAGATTATCACTTTCTTGTGTCCGAGAAATTATGTAGTGAGGCTTCCAGCCGTTATCAGACA
GGACATTTTGATTTGGCATTGTGTCCAGTGAATCTCATAGCTGGAGAGAATCACATCCCTTTGCATGGACTACTGTTCTG
TATATGTCTTGGTTTGCAGTCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis