Browse Element(s) Details


OsAffx.14669.1.S1_at

Description tigr:9633.m01151
TID=OsAffx.14669.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1335011/11hypothetical protein
LOC_Os08g142801/11hypothetical protein
LOC_Os08g363401/11K+ potassium transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13330Os.16585.1.S1_at11/115+7377797..7382612Per1-like family protein, expressed
LOC_Os05g13340OsAffx.14668.1.S1_at11/115+7385664..7386168hypothetical protein
LOC_Os05g13350OsAffx.14669.1.S1_at11/115+7388058..7388423hypothetical protein
LOC_Os05g13350OsAffx.887.1.S1_x_at1/115+7388058..7388423hypothetical protein
LOC_Os05g13360OsAffx.14670.1.S1_at11/115+7394699..7395970expressed protein
LOC_Os05g13370Os.53632.1.S1_at11/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13370Os.52150.1.S1_at1/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13380Os.51507.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13380OsAffx.25367.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13390Os.17320.1.S2_at11/115+7411639..7417618expressed protein
LOC_Os05g13390Os.17320.1.S1_at11/115+7411639..7417618expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0016020cellular_componentmembrane
GO:0009674molecular_functionpotassium:sodium symporter activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14669.1.S1_at--486--2751Chr05:7388325..7388349 (25 bp)
AAGAACAGACGAACAAGAGCAGATC
LOC_Os05g13350
OsAffx.14669.1.S1_at--979--2771Chr05:7388311..7388335 (25 bp)
AAGAGCAGATCGCATCTCCATGTAC
LOC_Os05g13350
OsAffx.14669.1.S1_at--433--471Chr05:7388298..7388322 (25 bp)
ATCTCCATGTACTGGATCGAACCTG
LOC_Os05g13350
OsAffx.14669.1.S1_at--347--751Chr05:7388292..7388316 (25 bp)
ATGTACTGGATCGAACCTGCCGACT
LOC_Os05g13350
OsAffx.14669.1.S1_at--148--4051Chr05:7388257..7388281 (25 bp)
CGATCTCGCCGACAATCAATCACAG
LOC_Os05g13350
OsAffx.14669.1.S1_at--608--4511Chr05:7388250..7388274 (25 bp)
GCCGACAATCAATCACAGTGGTCTT
LOC_Os05g13350
OsAffx.14669.1.S1_at--223--7512Chr05:7388233..7388257 (25 bp)
GTGGTCTTCATCAATTTGTCGCCGC
LOC_Os05g13350
OsAffx.14669.1.S1_at--397--95730Chr12:27201491..27201624 (24 bp)
TCTTCATCAATTTGTCGCCGCCGAC
NONE
OsAffx.14669.1.S1_at--737--4491Chr05:7388210..7388234 (25 bp)
GCCGACCCGTCCACATATATGGACA
LOC_Os05g13350
OsAffx.14669.1.S1_at--436--10191Chr05:7388195..7388219 (25 bp)
TATATGGACACCACACGTCCTCTGA
LOC_Os05g13350
OsAffx.14669.1.S1_at--1117--1891Chr05:7388181..7388205 (25 bp)
ACGTCCTCTGACAGATACATCTGCA
LOC_Os05g13350
Target Sequence 
AAGAACAGACGAACAAGAGCAGATCGCATCTCCATGTACTGGATCGAACCTGCCGACTCCTACATCATCGATCTCGCCGA
CAATCAATCACAGTGGTCTTCATCAATTTGTCGCCGCCGACCCGTCCACATATATGGACACCACACGTCCTCTGACAGAT
ACATCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14669.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis