Browse Element(s) Details


Os.17320.1.S2_at

Description gb:AK109456.1
DB_XREF= gi:32994665
TID=Os.17320.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-D12, full insert sequence.
FL= gb:AK109172.1 gb:AK109456.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1339011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13350OsAffx.14669.1.S1_at11/115+7388058..7388423hypothetical protein
LOC_Os05g13350OsAffx.887.1.S1_x_at1/115+7388058..7388423hypothetical protein
LOC_Os05g13360OsAffx.14670.1.S1_at11/115+7394699..7395970expressed protein
LOC_Os05g13370Os.53632.1.S1_at11/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13370Os.52150.1.S1_at1/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13380Os.51507.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13380OsAffx.25367.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13390Os.17320.1.S2_at11/115+7411639..7417618expressed protein
LOC_Os05g13390Os.17320.1.S1_at11/115+7411639..7417618expressed protein
LOC_Os05g13400NANA5+7421842..7423178hypothetical protein
LOC_Os05g13410NANA5+7423842..7425258hypothetical protein
LOC_Os05g13420Os.30055.1.S1_x_at11/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_a_at7/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_x_at5/115+7425652..7429603expressed protein
LOC_Os05g13430OsAffx.4322.1.S1_x_at11/115+7430044..7431337hypothetical protein
LOC_Os05g13440Os.37726.1.A1_at11/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_a_at6/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_x_at4/115+7434895..7440216expressed protein
LOC_Os05g13450OsAffx.26864.1.S1_at11/115+7441734..7445321hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17320.1.S2_at--781--1891Chr05:7416796..7416820 (25 bp)
ACGTCCCTTGCATCATGTTCATAGT
LOC_Os05g13390
Os.17320.1.S2_at--281--10511Chr05:7416829..7416853 (25 bp)
TTCAACAGCCTCTTTTGCTAGGTCT
LOC_Os05g13390
Os.17320.1.S2_at--19--6731Chr05:7416861..7416881 (21 bp)
GTTCTCTCCAACACAATTCTGGTCA
LOC_Os05g13390
Os.17320.1.S2_at--207--10611Chr05:7417152..7417172 (21 bp)
TTCTGGTCACACTCCAAGAAGTCCA
LOC_Os05g13390
Os.17320.1.S2_at--568--1451Chr05:7417164..7417188 (25 bp)
AGAAGTCCAGCGACTTTCTCGACAG
LOC_Os05g13390
Os.17320.1.S2_at--721--10231Chr05:7417232..7417256 (25 bp)
TATTGGCCATCCCTCAATATCATTG
LOC_Os05g13390
Os.17320.1.S2_at--923--5211Chr05:7417261..7417285 (25 bp)
GAATTAACTTTGTAGCCTCTTCGCC
LOC_Os05g13390
Os.17320.1.S2_at--387--6731Chr05:7417306..7417330 (25 bp)
GTTCTTCCTCCGTGTTCAGGGATTA
LOC_Os05g13390
Os.17320.1.S2_at--768--3111Chr05:7417491..7417515 (25 bp)
AATATTTTTCCATGACTCTCGTCCA
LOC_Os05g13390
Os.17320.1.S2_at--1099--7031Chr05:7417550..7417574 (25 bp)
GTAAGACGTTTTATGGACACCTATG
LOC_Os05g13390
Os.17320.1.S2_at--1133--1671Chr05:7417594..7417618 (25 bp)
AGCCGGTCGGGCAATATGTTTCATC
LOC_Os05g13390
Target Sequence 
ACGTCCCTTGCATCATGTTCATAGTATTTCTCCTTCAACAGCCTCTTTTGCTAGGTCTCCGTTCGGTTCTCTCCAACACA
ATTCTGGTCACACTCCAAGAAGTCCAGCGACTTTCTCGACAGCAAGTCCGTCCCGCTTTGCAGCTACTGGAAATCAAGGA
CATCCTATTGGCCATCCCTCAATATCATTGCCAGGAATTAACTTTGTAGCCTCTTCGCCTTCCCCCGCTGCCTCCGGCGG
TTCTTCCTCCGTGTTCAGGGATTATCGCCCACCCAATTCAACATAACATCCATGGGCTAATCAGGACTGTACATATTCTG
GAGGACAACTCCGTTATTAAGTTTTTTTTTCTCTTTTTCTTGAGAAGGGGGGGGGATTAATGTTATTTTGTGTTATTATG
CTGTATTAAGGGAAACACTACCGAAATATTTTTCCATGACTCTCGTCCAAAATTATCCAATATGTGTAAAGTTTATCATG
GCTGTAAGACGTTTTATGGACACCTATGTCTATATAGTAGTAGATTGAGCCGGTCGGGCAATATGTTTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17320.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis