Browse Element(s) Details


Os.51507.1.S1_at

Description gb:AK062979.1
DB_XREF= gi:32972997
TID=Os.51507.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F01, full insert sequence.
FL= gb:AK062979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g133801/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13330Os.16585.1.S1_at11/115+7377797..7382612Per1-like family protein, expressed
LOC_Os05g13340OsAffx.14668.1.S1_at11/115+7385664..7386168hypothetical protein
LOC_Os05g13350OsAffx.14669.1.S1_at11/115+7388058..7388423hypothetical protein
LOC_Os05g13350OsAffx.887.1.S1_x_at1/115+7388058..7388423hypothetical protein
LOC_Os05g13360OsAffx.14670.1.S1_at11/115+7394699..7395970expressed protein
LOC_Os05g13370Os.53632.1.S1_at11/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13370Os.52150.1.S1_at1/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13380Os.51507.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13380OsAffx.25367.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13390Os.17320.1.S2_at11/115+7411639..7417618expressed protein
LOC_Os05g13390Os.17320.1.S1_at11/115+7411639..7417618expressed protein
LOC_Os05g13400NANA5+7421842..7423178hypothetical protein
LOC_Os05g13410NANA5+7423842..7425258hypothetical protein
LOC_Os05g13420Os.30055.1.S1_x_at11/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_a_at7/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_x_at5/115+7425652..7429603expressed protein
LOC_Os05g13430OsAffx.4322.1.S1_x_at11/115+7430044..7431337hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51507.1.S1_at--106--7511Chr08:4586130..4586154 (25 bp)
GTGGTCTTCGCTACTATTGTTATTC
NONE
Os.51507.1.S1_at--79--3011Chr08:4586043..4586067 (25 bp)
AATGAGTCAGTTCAACTCCTGCGTC
NONE
Os.51507.1.S1_at--1114--6891Chr08:4585929..4585953 (25 bp)
GTATCTCTACTTGTCTAGGTTGCTT
NONE
Os.51507.1.S1_at--1156--2491Chr08:4585868..4585892 (25 bp)
AACTGGGTTTCATCTTTTGCCGCTT
NONE
Os.51507.1.S1_at--683--10591Chr08:4585833..4585857 (25 bp)
TTCTGCTCCTATCGTTGTTATCTGA
NONE
Os.51507.1.S1_at--227--8791Chr08:4585818..4585842 (25 bp)
TGTTATCTGAGTTCTGGCTGTTGCA
NONE
Os.51507.1.S1_at--245--2936Chr10:15744245..15744265 (21 bp)
AAGGACCTGATTGCTTTTTCTTCTC
NONE
Os.51507.1.S1_at--206--9511Chr08:4585752..4585776 (25 bp)
TCTCGTTGTTGAATCCTTTGCATTT
NONE
Os.51507.1.S1_at--986--3111Chr08:4585711..4585735 (25 bp)
AATTTGCTCATTCTCAAGGGACCTC
NONE
Os.51507.1.S1_at--660--2851Chr08:4585696..4585720 (25 bp)
AAGGGACCTCTCTGTAAAACTGGAT
NONE
Os.51507.1.S1_at--24--8571Chr08:4585676..4585700 (25 bp)
TGGATGTATTCCCACTTTGCTTATA
NONE
Target Sequence 
GTGGTCTTCGCTACTATTGTTATTCTCCAACAAGACCTAAAGGTGAGCTTAAATAAGAGGCTTGTTAGCTCAAACAAGGC
ATATGGGAATGAGTCAGTTCAACTCCTGCGTCAGCCACCTGTTCCTTCTCCGGCGACCCTCCTGCTCTAGCGACGGTCTT
CTTCCTCGACTACGACGATGGTTTAAAAGGGCAACTGAAGTGTATCTCTACTTGTCTAGGTTGCTTTAACCTCCATCCTT
CGGAGGTCCCATTTGGGTTCGCAACTGGGTTTCATCTTTTGCCGCTTGCCATGGTTTTTCTGCTCCTATCGTTGTTATCT
GAGTTCTGGCTGTTGCAGTTGCAAGAGATGCAAAGTCAAGGACCTGATTGCTTTTTCTTCTCGTTGTTGAATCCTTTGCA
TTTTTCAGAACTTATGTGTAATTTGCTCATTCTCAAGGGACCTCTCTGTAAAACTGGATGTATTCCCACTTTGCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis