Browse Element(s) Details


OsAffx.14670.1.S1_at

Description tigr:9633.m01152
TID=OsAffx.14670.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1336011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13330Os.16585.1.S1_at11/115+7377797..7382612Per1-like family protein, expressed
LOC_Os05g13340OsAffx.14668.1.S1_at11/115+7385664..7386168hypothetical protein
LOC_Os05g13350OsAffx.14669.1.S1_at11/115+7388058..7388423hypothetical protein
LOC_Os05g13350OsAffx.887.1.S1_x_at1/115+7388058..7388423hypothetical protein
LOC_Os05g13360OsAffx.14670.1.S1_at11/115+7394699..7395970expressed protein
LOC_Os05g13370Os.53632.1.S1_at11/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13370Os.52150.1.S1_at1/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13380Os.51507.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13380OsAffx.25367.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13390Os.17320.1.S2_at11/115+7411639..7417618expressed protein
LOC_Os05g13390Os.17320.1.S1_at11/115+7411639..7417618expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14670.1.S1_at--525--4231Chr05:7395378..7395402 (25 bp)
CCGACTCCGGCGAAGTGTCAGCGCG
LOC_Os05g13360
OsAffx.14670.1.S1_at--563--7451Chr05:7395392..7395416 (25 bp)
GTGTCAGCGCGGGTGTTCAACACCA
LOC_Os05g13360
OsAffx.14670.1.S1_at--722--7711Chr05:7395402..7395426 (25 bp)
GGGTGTTCAACACCAGAGCCACCGC
LOC_Os05g13360
OsAffx.14670.1.S1_at--127--4711Chr05:7395454..7395478 (25 bp)
GCGGCGCAGGTCACTGGACATGTTC
LOC_Os05g13360
OsAffx.14670.1.S1_at--1104--5651Chr05:7395470..7395494 (25 bp)
GACATGTTCGCGTCGGCCACGAGGC
LOC_Os05g13360
OsAffx.14670.1.S1_at--1154--10631Chr05:7395476..7395500 (25 bp)
TTCGCGTCGGCCACGAGGCAGCAGC
LOC_Os05g13360
OsAffx.14670.1.S1_at--471--511Chr05:7395527..7395551 (25 bp)
ATCGTCGCCGGAACAAGCACGGCGG
LOC_Os05g13360
OsAffx.14670.1.S1_at--277--9271Chr05:7395746..7395770 (25 bp)
TCCGGGTACTACCACCATTACTACT
LOC_Os05g13360
OsAffx.14670.1.S1_at--873--4911Chr05:7395843..7395867 (25 bp)
GCTTGCTGACGATGGGCTGTATGTC
LOC_Os05g13360
OsAffx.14670.1.S1_at--662--4731Chr05:7395858..7395882 (25 bp)
GCTGTATGTCCGATAGGGCCCTCGA
LOC_Os05g13360
OsAffx.14670.1.S1_at--383--4051Chr05:7395868..7395892 (25 bp)
CGATAGGGCCCTCGACGCGATCAGC
LOC_Os05g13360
Target Sequence 
CCGACTCCGGCGAAGTGTCAGCGCGGGTGTTCAACACCAGAGCCACCGCCGCCGCCGCATTGGCTGCGGACGAGCGGCGG
CGCAGGTCACTGGACATGTTCGCGTCGGCCACGAGGCAGCAGCAGAGCAGCCAGAACCCCGCCTTCACCATCGTCGCCGG
AACAAGCACGGCGGCGCGGGACGCCGGCGGCGCAGGAGCAAGCGCCACCATCCGGCGCGATGACCCCGGCGCCGCCGCCG
GCGACGACGCGGCGTCATCGGACGGGGAGCTGGTGGAGTGCGCGTACCCGCCGAGCGAGGCGAGCGTGGTGTGGAGCGTG
GTCACCGCGGACGGCGTGGCGTCCGCCGGCAACTTCTCCAGCGCGGCGTCCGGGTACTACCACCATTACTACTACCACAA
CGGCGGCGGCGGCGACGGGCGGCGCACGGATGCCGGGAAGAGCAGCCGGCGGAGCAGCGCCGGCGGCTTGCTGACGATGG
GCTGTATGTCCGATAGGGCCCTCGACGCGATCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis