Browse Element(s) Details


OsAffx.14668.1.S1_at

Description tigr:9633.m01150
TID=OsAffx.14668.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to pollen allergen Lol p XI - perennial ryegrass
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1334011/11hypothetical protein
LOC_Os06g120201/11NTGP5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13330Os.16585.1.S1_at11/115+7377797..7382612Per1-like family protein, expressed
LOC_Os05g13340OsAffx.14668.1.S1_at11/115+7385664..7386168hypothetical protein
LOC_Os05g13350OsAffx.14669.1.S1_at11/115+7388058..7388423hypothetical protein
LOC_Os05g13350OsAffx.887.1.S1_x_at1/115+7388058..7388423hypothetical protein
LOC_Os05g13360OsAffx.14670.1.S1_at11/115+7394699..7395970expressed protein
LOC_Os05g13370Os.53632.1.S1_at11/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13370Os.52150.1.S1_at1/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13380Os.51507.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13380OsAffx.25367.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14668.1.S1_at--673--9111Chr05:7386101..7386125 (25 bp)
TGCTGCTGCGGAGCCCTGAGCCAGA
LOC_Os05g13340
OsAffx.14668.1.S1_at--301--6111Chr05:7386078..7386102 (25 bp)
GAGTGCGCTGAGATCGAGCGATTCC
LOC_Os05g13340
OsAffx.14668.1.S1_at--949--71Chr05:7386058..7386082 (25 bp)
ATTCCGCGACCGTTCCCGTGTTGCA
LOC_Os05g13340
OsAffx.14668.1.S1_at--274--5111Chr05:7386036..7386060 (25 bp)
GCACTCACGGGCAACAATGGCATCA
LOC_Os05g13340
OsAffx.14668.1.S1_at--957--5171Chr05:7386010..7386034 (25 bp)
GCAAGGAGGCCTCTGGTACGCTAAC
LOC_Os05g13340
OsAffx.14668.1.S1_at--880--9451Chr05:7385999..7386023 (25 bp)
TCTGGTACGCTAACCCCATAGCCTT
LOC_Os05g13340
OsAffx.14668.1.S1_at--72--5471Chr05:7385915..7385939 (25 bp)
GAACGGAGACTGATTCATTCATTCA
LOC_Os05g13340
OsAffx.14668.1.S1_at--875--353Chr06:6436819..6436859 (25 bp)
ATAAGCATTTCTAGCTATGTATCTA
LOC_Os06g12020
OsAffx.14668.1.S1_at--238--10011Chr05:7385719..7385864 (25 bp)
TATACGTGTCCAGATTACTTAGATT
LOC_Os05g13340
OsAffx.14668.1.S1_at--132--9891Chr05:7385704..7385728 (25 bp)
TACTTAGATTTTTGTTCGGCCCTCA
LOC_Os05g13340
OsAffx.14668.1.S1_at--181--10271Chr05:7385694..7385718 (25 bp)
TTTGTTCGGCCCTCAAAATAGATAT
LOC_Os05g13340
Target Sequence 
TGCTGCTGCGGAGCCCTGAGCCAGAGTGCGCTGAGATCGAGCGATTCCGCGACCGTTCCCGTGTTGCACTCACGGGCAAC
AATGGCATCAAGCAAGGAGGCCTCTGGTACGCTAACCCCATAGCCTTCTTCCGCAAGGACCCGCTCCCCAACTTCGCTCC
TACAACCTCTACGATGACGACTCCGAGAACGGAGACTGATTCATTCATTCATCCATCCCTTCATTTCAAAATAAGCATTT
CTAGCTATGTATCTAGAAAAATATACGTGTCCAGATTACTTAGATTTTTGTTCGGCCCTCAAAATAGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis