Browse Element(s) Details


Os.16585.1.S1_at

Description gb:AK122045.1
DB_XREF= gi:37991691
TID=Os.16585.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16585 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113P15, full insert sequence.
FL= gb:AK122045.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1333011/11Per1-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13300Os.54253.1.S1_at7/115+7346795..7354923Helicase, putative, expressed
LOC_Os05g13300OsAffx.31500.1.S1_at1/115+7346795..7354923Helicase, putative, expressed
LOC_Os05g13300Os.19965.1.S1_at1/115+7346795..7354923Helicase, putative, expressed
LOC_Os05g13320Os.50364.1.S1_at11/115+7358012..7360320C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os05g13320Os.5608.3.S1_x_at1/115+7358012..7360320C4-dicarboxylate transporter/malic acid transport family protein, putative, expressed
LOC_Os05g13330Os.16585.1.S1_at11/115+7377797..7382612Per1-like family protein, expressed
LOC_Os05g13340OsAffx.14668.1.S1_at11/115+7385664..7386168hypothetical protein
LOC_Os05g13350OsAffx.14669.1.S1_at11/115+7388058..7388423hypothetical protein
LOC_Os05g13350OsAffx.887.1.S1_x_at1/115+7388058..7388423hypothetical protein
LOC_Os05g13360OsAffx.14670.1.S1_at11/115+7394699..7395970expressed protein
LOC_Os05g13370Os.53632.1.S1_at11/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13370Os.52150.1.S1_at1/115+7397337..7401509rhomboid family protein, putative, expressed
LOC_Os05g13380Os.51507.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific
LOC_Os05g13380OsAffx.25367.1.S1_at1/115+7404000..7408369retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16585.1.S1_at--14--5331Chr05:7378358..7378382 (25 bp)
GAAGTATACGACTTTCCTCCGTACA
LOC_Os05g13330
Os.16585.1.S1_at--277--2891Chr05:7378334..7378358 (25 bp)
AAGGGATACGCTGATGCACACTCGC
LOC_Os05g13330
Os.16585.1.S1_at--14--5211Chr05:7378247..7378271 (25 bp)
GAATTCCGCACATCAACTCTTATTA
LOC_Os05g13330
Os.16585.1.S1_at--622--2311Chr05:7378215..7378239 (25 bp)
AAAGTGACTCAAGGCCGCAGATTTT
LOC_Os05g13330
Os.16585.1.S1_at--1009--791Chr05:7378149..7378173 (25 bp)
ATGGGACGGGTTCCCTATCTAACAT
LOC_Os05g13330
Os.16585.1.S1_at--699--531Chr05:7378126..7378150 (25 bp)
ATCGCCGAATCTCAGTGTGTTTGCC
LOC_Os05g13330
Os.16585.1.S1_at--513--2011Chr05:7378025..7378049 (25 bp)
ACTCAGCATGTTATTTCCGGTGTAT
LOC_Os05g13330
Os.16585.1.S1_at--891--4251Chr05:7378009..7378033 (25 bp)
CCGGTGTATCATGTTTTTGCCCTGA
LOC_Os05g13330
Os.16585.1.S1_at--493--2511Chr05:7377941..7377965 (25 bp)
AACATCATCTTGTTCTGGTACCTGA
LOC_Os05g13330
Os.16585.1.S1_at--906--4531Chr05:7377894..7377918 (25 bp)
GCCCGTGTCTGCTTATATGTCGAAA
LOC_Os05g13330
Os.16585.1.S1_at--532--4751Chr05:7377816..7377840 (25 bp)
GCTGCTTTTGTTTTAACCTTCCTGA
LOC_Os05g13330
Target Sequence 
GAAGTATACGACTTTCCTCCGTACAAGGGATACGCTGATGCACACTCGCTGTGGCATGCAAGCACCATTCCTCTCACATA
TCTCTGGTGGAGTTTCATCAAGGATGACGCAGAATTCCGCACATCAACTCTTATTAAGAAGGCAAAGTGACTCAAGGCCG
CAGATTTTAACTCTCTGAACATCAGATTTCTTGGGCAACTCAAGGGAACATGGGACGGGTTCCCTATCTAACATCGCCGA
ATCTCAGTGTGTTTGCCCCCCCCCCCTAGATTCTCCTGTAAAATTGATTAGAACAAGTAATTCATGTTTGCACATCAAGA
TTTTGGTCCTCAAACTCAGCATGTTATTTCCGGTGTATCATGTTTTTGCCCTGATTTGAATTTTGATTAGCTCGAAACAA
ACCATTATGTAGTANGAAAACATCATCTTGTTCTGGTACCTGATGGAAAGATTGAACAATGAGGGGCCCGTGTCTGCTTA
TATGTCGAAAATTAGTCTGAAGTCTGAACATGATTTATTCCCAGTGTGCTTATATGTTCACATGCTGCTTTTGTTTTAAC
CTTCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis