Browse Element(s) Details


OsAffx.26864.1.S1_at

Description tigr:9633.m01161
TID=OsAffx.26864.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1345011/11hypothetical protein
LOC_Os12g094308/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13390Os.17320.1.S2_at11/115+7411639..7417618expressed protein
LOC_Os05g13390Os.17320.1.S1_at11/115+7411639..7417618expressed protein
LOC_Os05g13400NANA5+7421842..7423178hypothetical protein
LOC_Os05g13410NANA5+7423842..7425258hypothetical protein
LOC_Os05g13420Os.30055.1.S1_x_at11/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_a_at7/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_x_at5/115+7425652..7429603expressed protein
LOC_Os05g13430OsAffx.4322.1.S1_x_at11/115+7430044..7431337hypothetical protein
LOC_Os05g13440Os.37726.1.A1_at11/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_a_at6/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_x_at4/115+7434895..7440216expressed protein
LOC_Os05g13450OsAffx.26864.1.S1_at11/115+7441734..7445321hypothetical protein
LOC_Os05g13460NANA5+7446701..7451097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13470OsAffx.4323.1.S1_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13470OsAffx.4323.2.S1_s_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13480OsAffx.4324.1.S1_at11/115+7455783..7456355hypothetical protein
LOC_Os05g13490OsAffx.26865.1.S1_x_at11/115+7457337..7458666BURP domain containing protein
LOC_Os05g13490Os.28427.2.S1_x_at1/115+7457337..7458666BURP domain containing protein
LOC_Os05g13500OsAffx.14671.2.S1_at10/115+7461250..7463093hypothetical protein
LOC_Os05g13510OsAffx.7916.1.S1_at6/115+7465943..7470265retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26864.1.S1_at--838--2572Chr12:4940066..4940090 (25 bp)
AACGCTCGGCAACAACTCTTCAAGA
LOC_Os12g09430
OsAffx.26864.1.S1_at--917--2391Chr05:7444376..7444400 (25 bp)
AAACTTATTGGCAGGGCTCTCAAGA
LOC_Os05g13450
OsAffx.26864.1.S1_at--208--2752Chr12:4940117..4940141 (25 bp)
AAGAAACTTGGAGCCGAGCCTGCGC
LOC_Os12g09430
OsAffx.26864.1.S1_at--939--2411Chr05:7444745..7444769 (25 bp)
AAAACTCAGGGTGGACAATCGTCTT
LOC_Os05g13450
OsAffx.26864.1.S1_at--262--6491Chr05:7444787..7444959 (25 bp)
GATAGTACCACTCCACAGGTTGCAT
LOC_Os05g13450
OsAffx.26864.1.S1_at--901--5512Chr12:4940686..4940710 (25 bp)
GAAAATCCGTGATCCATCGTGTTGG
LOC_Os12g09430
OsAffx.26864.1.S1_at--653--492Chr12:4940701..4940725 (25 bp)
ATCGTGTTGGTCCTTCTGAGAACAA
LOC_Os12g09430
OsAffx.26864.1.S1_at--774--10072Chr12:4940738..4940762 (25 bp)
TATAGCTTTTCGAGCACCAACCAAG
LOC_Os12g09430
OsAffx.26864.1.S1_at--705--3212Chr12:4940759..4940783 (25 bp)
CAAGTCCTCACCTCGAGTATTTTAT
LOC_Os12g09430
OsAffx.26864.1.S1_at--231--8952Chr12:4940810..4940834 (25 bp)
TGACACTTGTGTTTTTGCCTTTAAA
LOC_Os12g09430
OsAffx.26864.1.S1_at--802--10472Chr12:4940871..4940894 (24 bp)
TTACGTGATTTTGCTCTCGAGTTTA
LOC_Os12g09430
Target Sequence 
AACGCTCGGCAACAACTCTTCAAGAGTTGCAAACTTATTGGCAGGGCTCTCAAGAAACTTGGAGCCGAGCCTGCGCAGCT
TGATGAAGATGATTCAAAAACTCAGGGTGGACAATCGTCTTCGAGCCGCCAAGGAAATGATAGTACCACTCCACAGGTTG
CATCGAAACGAAAATCCGTGATCCATCGTGTTGGTCCTTCTGAGAACAAAAATTTGAAGCATATAGCTTTTCGAGCACCA
ACCAAGTCCTCACCTCGAGTATTTTATCAAAGCGAAGATAAAATTTACTATGATGACACTTGTGTTTTTGCCTTTAAATT
TTTTAGTTGGCAAAAGCGACATCGAGATGGTAGTTTACGTGATTTTGCTCTCGAGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis