Browse Element(s) Details


OsAffx.7916.1.S1_at

Description gb:NM_197708.1
DB_XREF= gi:37536775
TID=OsAffx.7916.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol polyprotein (OSJNBa0010C11.11), mRNA.
PROD=putative gag-pol polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4080011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g392308/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g135106/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g164303/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g303501/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g171001/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40780Os.4089.1.S1_at11/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40780Os.56157.1.A1_at1/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40790Os.46319.1.S1_s_at10/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.49499.1.S1_at9/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.17829.1.S1_at9/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.30371.1.S1_at6/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.12663.1.S1_at3/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.4491.1.S1_at1/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.26733.2.S1_x_at1/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.52575.1.S1_x_at1/1110+21577938..21585323expressed protein
LOC_Os10g40800OsAffx.7916.1.S1_at11/1110+21587702..21591963retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g40802NANA10+21601568..21602690NA
LOC_Os10g40804Os.2741.4.S1_x_at10/1110+21604687..21607349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40806NANA10+21609129..21610643hypothetical protein
LOC_Os10g40810OsAffx.6930.1.S1_at11/1110+21613675..21615499GATA zinc finger family protein, expressed
LOC_Os10g40810Os.46625.1.S1_x_at11/1110+21613675..21615499GATA zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7916.1.S1_at--1111--7451Chr10:21588268..21588292 (25 bp)
GTGTGCCAGTATTTGCATGCAGCAA
LOC_Os10g40800
OsAffx.7916.1.S1_at--73--3775Chr07:23488310..23488334 (25 bp)
CTCTTCTTGTAAGTGCTTTCTCTGA
LOC_Os07g39230
OsAffx.7916.1.S1_at--1002--6273Chr07:23488349..23488373 (25 bp)
GATGTTTGGATGATCGGCGTTCTAC
LOC_Os07g39230
OsAffx.7916.1.S1_at--68--10414Chr05:7469868..7469892 (25 bp)
TTATAGGGCCTAATCTTGTGTCATG
LOC_Os05g13510
OsAffx.7916.1.S1_at--258--6111Chr10:21588050..21588074 (25 bp)
GAGTGCACGTAAGCAGGCTACTGTA
LOC_Os10g40800
OsAffx.7916.1.S1_at--417--6473Chr07:23488503..23488527 (25 bp)
GATACAAACCTTACTTCATGAACTG
LOC_Os07g39230
OsAffx.7916.1.S1_at--441--7612Chr07:23488527..23488551 (25 bp)
GGGAATTCAGGTACCCAAAATTGCT
LOC_Os07g39230
OsAffx.7916.1.S1_at--1071--9092Chr07:23488608..23488632 (25 bp)
TGCTCGCACCAAGCATATCGAGGTA
LOC_Os07g39230
OsAffx.7916.1.S1_at--190--3333Chr07:23488639..23488663 (25 bp)
CACTTTGTTCGTGAGCGGGTTGCAA
LOC_Os07g39230
OsAffx.7916.1.S1_at--592--375Chr08:9946843..9946867 (25 bp)
ATCAAGTTGCTGATGGCTTCACCAA
NONE
OsAffx.7916.1.S1_at--1135--853Chr07:23488712..23488736 (25 bp)
ATGGCTTCACCAAGACACTGTCAGT
LOC_Os07g39230
Target Sequence 
GTGTGCCAGTATTTGCATGCAGCAACCACTAAGCATTGGGTGGCGGCTAAGAGGATTTTGAGATATTTGAAACATACAGT
TAAGCTTGGGCTAAAAATTAGCAAGTCTAATTCTCTTCTTGTAAGTGCTTTCTCTGATGCAGATTGGGCAGGATGTTTGG
ATGATCGGCGTTCTACTGGGGGTTTTGCTGTTTTTATAGGGCCTAATCTTGTGTCATGGAGTGCACGTAAGCAGGCTACT
GTATCCAGATCTAGTACAGAAGCAGAATATAAGGCTTTGGCTAATGCTACTGCAGAGATTATGTGGATACAAACCTTACT
TCATGAACTGGGAATTCAGGTACCCAAAATTGCTAAGGTATGGTGTGATAATATTGGTGCAAAGTATATGACAGCTAATC
CTGTTTTTCATGCTCGCACCAAGCATATCGAGGTAGATTATCACTTTGTTCGTGAGCGGGTTGCAAGAAAACTTTTACAA
GTGGAATATATATCTACCAAAGATCAAGTTGCTGATGGCTTCACCAAGACACTGTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis