Browse Element(s) Details


Os.17829.1.S1_at

Description gb:NM_197707.1
DB_XREF= gi:37536773
TID=Os.17829.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0010C11.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0010C11.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g407909/11expressed protein
LOC_Os10g102801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40780Os.4089.1.S1_at11/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40780Os.56157.1.A1_at1/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40790Os.46319.1.S1_s_at10/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.49499.1.S1_at9/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.17829.1.S1_at9/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.30371.1.S1_at6/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.12663.1.S1_at3/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.4491.1.S1_at1/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.26733.2.S1_x_at1/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.52575.1.S1_x_at1/1110+21577938..21585323expressed protein
LOC_Os10g40800OsAffx.7916.1.S1_at11/1110+21587702..21591963retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g40802NANA10+21601568..21602690NA
LOC_Os10g40804Os.2741.4.S1_x_at10/1110+21604687..21607349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40806NANA10+21609129..21610643hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17829.1.S1_at--1137--3371Chr10:21578786..21578810 (25 bp)
CAGCCTTGGTGATTGATCGGAAGAA
LOC_Os10g40790
Os.17829.1.S1_at--235--3012Chr10:21580473..21580493 (21 bp)
AATGCAGAAGGAGCGAGAGTGTCAC
LOC_Os10g40790
Os.17829.1.S1_at--83--6132Chr10:21580485..21580509 (25 bp)
GAGTGTCACGATGGTGCAGAGCATA
LOC_Os10g40790
Os.17829.1.S1_at--127--3431Chr10:21580501..21580525 (25 bp)
CAGAGCATATCCCAGATTGGCCGTA
LOC_Os10g40790
Os.17829.1.S1_at--234--8472Chr10:21580518..21580542 (25 bp)
TGGCCGTATGGCGAGCAAATGGATA
LOC_Os10g40790
Os.17829.1.S1_at--197--4812Chr10:21581448..21581472 (25 bp)
GCTCGTCTGCTTTGGGTGCCGTCCA
LOC_Os10g40790
Os.17829.1.S1_at--443--3992Chr10:21581467..21581491 (25 bp)
CGTCCAGCCAGAGCAACGTCGGTTT
LOC_Os10g40790
Os.17829.1.S1_at--683--3712Chr10:21581912..21581936 (25 bp)
CTAGAGTTGTTGTTCGCATCTTCGC
LOC_Os10g40790
Os.17829.1.S1_at--700--7491NONE
GTGGTGGCAGAGATATTCTCCGCAA
NONE
Os.17829.1.S1_at--709--6012Chr10:21584598..21584622 (25 bp)
GAGAGATCATCTAAAGCATGGTTAA
LOC_Os10g40790
Os.17829.1.S1_at--522--10411NONE
TTAAAAAACAGTATACACCCATGGT
NONE
Target Sequence 
CAGCCTTGGTGATTGATCGGAAGAAGGAAATGCAGAAGGAGCGAGAGTGTCACGATGGTGCAGAGCATATCCCAGATTGG
CCGTATGGCGAGCAAATGGATAGATGGGGCCCAAAGCCAGCTCGTCTGCTTTGGGTGCCGTCCAGCCAGAGCAACGTCGG
TTTGCTGCGCGGTTTGCAGTACCGTGACCGCTGTGCCTGCTCCCGGCCGCTCGCGAAGAAGTACACACTAGAGTTGTTGT
TCGCATCTTCGCCGCCGTCGGTGACCGCTGCGGCCATGAAGGAGTGTGTGCTTGATGAGTACTCCACCAAGCACAGGATC
TCTATCGATAGGTTTCTCCAGCTGAAGATATTTGTCAAGATTGCCATTCTTGACAGTGTGAACATGGGTGGTGGCAGAGA
TATTCTCCGCAAAGAGAGATCATCTAAAGCATGGTTAAAAAACAGTATACACCCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis