Browse Element(s) Details


OsAffx.12663.1.S1_at

Description tigr:9630.m05592
TID=OsAffx.12663.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5636011/11expressed protein
LOC_Os07g289107/11LSD1 zinc finger family protein, expressed
LOC_Os10g407903/11expressed protein
LOC_Os06g010503/11hypothetical protein
LOC_Os04g108601/11transposon protein, putative, unclassified
LOC_Os08g062801/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56320OsAffx.24892.1.S1_x_at11/112+34470061..34476909Glycogen synthase, putative, expressed
LOC_Os02g56330OsAffx.12662.1.S1_at3/112+34477416..34479901Calcium binding EGF domain containing protein, expressed
LOC_Os02g56340Os.53293.1.S1_at11/112+34482508..34483496expressed protein
LOC_Os02g56350OsAffx.12662.1.S1_at11/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_x_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56360Os.18659.1.S1_s_at11/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.12663.1.S1_at11/112+34494718..34498687expressed protein
LOC_Os02g56360Os.51194.1.A1_x_at7/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.11133.1.S1_at1/112+34494718..34498687expressed protein
LOC_Os02g56370OsAffx.18050.2.S1_at11/112+34503842..34506710wall-associated kinase-like 1, putative, expressed
LOC_Os02g56380Os.49913.1.S1_at11/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56380OsAffx.24548.1.S1_x_at1/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56390Os.14919.1.S1_at5/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390Os.56216.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390OsAffx.29313.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0006917biological_processinduction of apoptosis
GO:0008219biological_processcell death
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12663.1.S1_at--299--291Chr02:34497593..34497617 (25 bp)
ATAGTGTTCGCCCTGATGCATTCTT
LOC_Os02g56360
OsAffx.12663.1.S1_at--1109--4531Chr02:34497602..34497626 (25 bp)
GCCCTGATGCATTCTTTTGGACTAG
LOC_Os02g56360
OsAffx.12663.1.S1_at--312--10032Chr07:16952048..16952072 (25 bp)
TAGACAGCTTTTTCTTGAATCAGAT
LOC_Os07g28910
OsAffx.12663.1.S1_at--495--3433Chr07:16952068..16952092 (25 bp)
CAGATGTTACTGTTCCTGGTTCAGA
LOC_Os07g28910
OsAffx.12663.1.S1_at--580--3435Chr10:21581219..21581243 (25 bp)
CAGAGGTTGCAGTTTATTCTGCTCA
LOC_Os10g40790
OsAffx.12663.1.S1_at--519--113Chr10:21581234..21581258 (25 bp)
ATTCTGCTCATAGAAATCCTGAAAG
LOC_Os10g40790
OsAffx.12663.1.S1_at--1021--6811Chr02:34497730..34497754 (25 bp)
GTTTAGAGAGAACTCCTTGTTGAGA
LOC_Os02g56360
OsAffx.12663.1.S1_at--730--10472Chr07:16952167..16952191 (25 bp)
TTACTGCTGAGTTTCGTTGTCTGAA
LOC_Os07g28910
OsAffx.12663.1.S1_at--569--8772Chr07:16952238..16952262 (25 bp)
TGTTAGCTGCTGAAATGCGACATTC
LOC_Os07g28910
OsAffx.12663.1.S1_at--1104--2273Chr07:16952250..16952274 (25 bp)
AAATGCGACATTCAGTCAGTCTCTG
LOC_Os07g28910
OsAffx.12663.1.S1_at--907--10535Chr10:21581388..21581436 (25 bp)
TTCAGTCAGTCTCTGAATTTCAGGG
LOC_Os10g40790
Target Sequence 
ATAGTGTTCGCCCTGATGCATTCTTTTGGACTAGAAATCTTATGAACTGAATTTCAATAGACAGCTTTTTCTTGAATCAG
ATGTTACTGTTCCTGGTTCAGAGGTTGCAGTTTATTCTGCTCATAGAAATCCTGAAAGTTTAGAGAGAACTCCTTGTTGA
GAAAATGGAAGTTTTTTTACTGCTGAGTTTCGTTGTCTGAAATGAAAATGATGCATGGAAGATGCTTTTGTTGTCTGAAA
ATGAAAATGTTAGCTGCTGAAATGCGACATTCAGTCAGTCTCTGAATTTCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis