Browse Element(s) Details


Os.53293.1.S1_at

Description gb:AK071841.1
DB_XREF= gi:32981864
TID=Os.53293.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120H11, full insert sequence.
FL= gb:AK071841.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5634011/11expressed protein
LOC_Os11g072901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56300Os.6404.1.S1_at11/112+34457164..34461142aminotransferase, classes I and II family protein, expressed
LOC_Os02g56310Os.53968.1.S1_at11/112+34462885..34465156Protein kinase domain containing protein, expressed
LOC_Os02g56320OsAffx.24892.1.S1_x_at11/112+34470061..34476909Glycogen synthase, putative, expressed
LOC_Os02g56330OsAffx.12662.1.S1_at3/112+34477416..34479901Calcium binding EGF domain containing protein, expressed
LOC_Os02g56340Os.53293.1.S1_at11/112+34482508..34483496expressed protein
LOC_Os02g56350OsAffx.12662.1.S1_at11/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_x_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56360Os.18659.1.S1_s_at11/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.12663.1.S1_at11/112+34494718..34498687expressed protein
LOC_Os02g56360Os.51194.1.A1_x_at7/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.11133.1.S1_at1/112+34494718..34498687expressed protein
LOC_Os02g56370OsAffx.18050.2.S1_at11/112+34503842..34506710wall-associated kinase-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53293.1.S1_at--1022--7611Chr02:34482855..34482879 (25 bp)
GGGAAAGCTCTACCGACTGCCTCAC
LOC_Os02g56340
Os.53293.1.S1_at--490--4711Chr02:34482915..34482939 (25 bp)
GCTGGCCCACGAATGCGTTGGCAAA
LOC_Os02g56340
Os.53293.1.S1_at--561--1532Chr11:3672258..3672284 (23 bp)
AGCCCCTGCCCAAGACGGATTTCAG
LOC_Os11g07290
Os.53293.1.S1_at--207--9331Chr02:34483097..34483121 (25 bp)
TCGCCGGCGGTGAGTTTCTCTAAGA
LOC_Os02g56340
Os.53293.1.S1_at--1039--2752Chr02:34483118..34483249 (25 bp)
AAGACTATTGAGTTGCTTGAACGCT
LOC_Os02g56340
Os.53293.1.S1_at--538--5452Chr02:34483243..34483267 (25 bp)
GAACGCTTCAAAGACTTCAGGCACC
LOC_Os02g56340
Os.53293.1.S1_at--181--931Chr02:34483261..34483285 (25 bp)
AGGCACCAACCTGAAGCTCTTATTC
LOC_Os02g56340
Os.53293.1.S1_at--406--4811Chr02:34483276..34483300 (25 bp)
GCTCTTATTCTTTGAGGCCAACAAG
LOC_Os02g56340
Os.53293.1.S1_at--750--3411Chr02:34483402..34483426 (25 bp)
CAGAATGCTCCTTCCGAAGTAATTT
LOC_Os02g56340
Os.53293.1.S1_at--335--9731Chr02:34483421..34483445 (25 bp)
TAATTTTTGTTACAGCATTTCCCCA
LOC_Os02g56340
Os.53293.1.S1_at--1013--191Chr02:34483437..34483461 (25 bp)
ATTTCCCCAACGTATTATGCACAGC
LOC_Os02g56340
Target Sequence 
GGGAAAGCTCTACCGACTGCCTCACGATCCCCTCCACCCACGTCTCCTTCCACGACCATCGCTGGCCCACGAATGCGTTG
GCAAAGGTGGCGCAGCCCCTGCCCAAGACGGATTTCAGCCGTGCCGCCCACGTCCTGGNGCGGGATCCACCTTCACTCGT
GGGGCTCGCCTGTTCNACCACCACCCGTGACGGTTCAACCCTCGCTGTCGGCCTGCCGCTGACCGGGAAGGGAGCAATCC
GCGTCGCCGGCGGTGAGTTTCTCTAAGACTATTGAGTTGCTTGAACGCTTCAAAGACTTCAGGCACCAACCTGAAGCTCT
TATTCTTTGAGGCCAACAAGTTCAGGGAACAATGAAGAATCGTTAAAATACTATAAGCAGGAAGGTCCCTTGAAGGATTT
CAGCGAGAGGGGAACCATGAATCAGCTTTGGTTGCTTAGATCAGAATGCTCCTTCCGAAGTAATTTTTGTTACAGCATTT
CCCCAACGTATTATGCACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis