Browse Element(s) Details


OsAffx.18050.2.S1_at

Description tigr:9630.m05594
TID=OsAffx.18050.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5637011/11wall-associated kinase-like 1, putative, expressed
LOC_Os12g165201/11wall-associated kinase-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56330OsAffx.12662.1.S1_at3/112+34477416..34479901Calcium binding EGF domain containing protein, expressed
LOC_Os02g56340Os.53293.1.S1_at11/112+34482508..34483496expressed protein
LOC_Os02g56350OsAffx.12662.1.S1_at11/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_x_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56360Os.18659.1.S1_s_at11/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.12663.1.S1_at11/112+34494718..34498687expressed protein
LOC_Os02g56360Os.51194.1.A1_x_at7/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.11133.1.S1_at1/112+34494718..34498687expressed protein
LOC_Os02g56370OsAffx.18050.2.S1_at11/112+34503842..34506710wall-associated kinase-like 1, putative, expressed
LOC_Os02g56380Os.49913.1.S1_at11/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56380OsAffx.24548.1.S1_x_at1/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56390Os.14919.1.S1_at5/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390Os.56216.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390OsAffx.29313.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56400OsAffx.3089.1.S1_at11/112+34525687..34528410Calcium binding EGF domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18050.2.S1_at--913--9111Chr02:34504346..34504370 (25 bp)
TGCTGAACAGACAGGAGTCACAACT
LOC_Os02g56370
OsAffx.18050.2.S1_at--245--8031Chr02:34504333..34504357 (25 bp)
GGAGTCACAACTGTTATTCAAGGAA
LOC_Os02g56370
OsAffx.18050.2.S1_at--577--992Chr12:9462009..9462028 (20 bp)
AGGATACTTAGACCCCATGTACTCT
LOC_Os12g16520
OsAffx.18050.2.S1_at--105--1391Chr02:34504295..34504319 (25 bp)
AGACCCCATGTACTCTTACACGGGA
LOC_Os02g56370
OsAffx.18050.2.S1_at--840--10471Chr02:34504280..34504304 (25 bp)
TTACACGGGACGTCTCACCGAGAAG
LOC_Os02g56370
OsAffx.18050.2.S1_at--273--4051Chr02:34504262..34504286 (25 bp)
CGAGAAGAGCGACGTTTTTAGCTTT
LOC_Os02g56370
OsAffx.18050.2.S1_at--378--9591Chr02:34504169..34504193 (25 bp)
TCTTGTTTCGCATTTCACTACGCTA
LOC_Os02g56370
OsAffx.18050.2.S1_at--152--6851Chr02:34504165..34504189 (25 bp)
GTTTCGCATTTCACTACGCTACTCA
LOC_Os02g56370
OsAffx.18050.2.S1_at--1074--2011Chr02:34503956..34503980 (25 bp)
ACATAGCATGGCCAATAAAAGTTCT
LOC_Os02g56370
OsAffx.18050.2.S1_at--92--8731Chr02:34503920..34503944 (25 bp)
TGTCTCAATGAGTTACCCGGCAAAT
LOC_Os02g56370
OsAffx.18050.2.S1_at--598--6071Chr02:34503911..34503935 (25 bp)
GAGTTACCCGGCAAATGAAGGCACA
LOC_Os02g56370
Target Sequence 
TGCTGAACAGACAGGAGTCACAACTGTTATTCAAGGAACACTAGGATACTTAGACCCCATGTACTCTTACACGGGACGTC
TCACCGAGAAGAGCGACGTTTTTAGCTTTGGTGTTGTTCTAATAGAGTTACTTACTAGGAAAAAACCATACTCATACAGA
TCACCTGAGGATGACGGTCTTGTTTCGCATTTCACTACGCTACTCACACGTGACAACTTGGGTCACATACTTGATCCTCA
AGTCGTGGAAGAGGGAGGAAAAGAAGTTAAAGAAGTAGCTTTGTTAGCTGTGGCATGTGTCAAGCTGAAAGCAGAGGAGC
GGCCCACTATGAGACAGGTGGAAATGACACTTGAAAGCATAAGATCATTGTTTCTGCAGCAAGAAGCTATACATAGCATG
GCCAATAAAAGTTCTAAGGAGAATCATGTCTCAATGAGTTACCCGGCAAATGAAGGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18050.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis