Browse Element(s) Details


OsAffx.3089.1.S1_at

Description tigr:9630.m05597
TID=OsAffx.3089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5640011/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56370OsAffx.18050.2.S1_at11/112+34503842..34506710wall-associated kinase-like 1, putative, expressed
LOC_Os02g56380Os.49913.1.S1_at11/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56380OsAffx.24548.1.S1_x_at1/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56390Os.14919.1.S1_at5/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390Os.56216.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390OsAffx.29313.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56400OsAffx.3089.1.S1_at11/112+34525687..34528410Calcium binding EGF domain containing protein
LOC_Os02g56410Os.53217.1.S1_x_at3/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.43567.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.38172.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410OsAffx.26987.1.S1_at1/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56420Os.55685.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.12665.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.28164.2.S1_at3/112+34539408..34547739wall-associated kinase 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3089.1.S1_at--894--9251Chr02:34526246..34526270 (25 bp)
TCCTGCTTGATGATAAGTTCAACGC
LOC_Os02g56400
OsAffx.3089.1.S1_at--1013--8271Chr02:34526041..34526065 (25 bp)
GGCATTATACCTTGACGGACCAGAG
LOC_Os02g56400
OsAffx.3089.1.S1_at--1016--5651Chr02:34526013..34526037 (25 bp)
GACAGGTGCCTGGTGTCATGTTTCA
LOC_Os02g56400
OsAffx.3089.1.S1_at--878--3391Chr02:34525985..34526009 (25 bp)
CAGCTGTGAAGGTTGGTCGTCATCA
LOC_Os02g56400
OsAffx.3089.1.S1_at--666--1611Chr02:34525931..34525955 (25 bp)
AGCTGAGTGACGAAATGCTCCAAGA
LOC_Os02g56400
OsAffx.3089.1.S1_at--1112--4771Chr02:34525915..34525939 (25 bp)
GCTCCAAGAGATTACATACCTCCTA
LOC_Os02g56400
OsAffx.3089.1.S1_at--729--311Chr02:34525900..34525924 (25 bp)
ATACCTCCTAATGAGATGCCTAAGC
LOC_Os02g56400
OsAffx.3089.1.S1_at--770--5071Chr02:34525804..34525828 (25 bp)
GCACCCTTGGGCTAAAGCTGAAGGC
LOC_Os02g56400
OsAffx.3089.1.S1_at--961--5911Chr02:34525762..34525786 (25 bp)
GAGCTTGCTCGGCATGGAACAAAAT
LOC_Os02g56400
OsAffx.3089.1.S1_at--794--9971Chr02:34525728..34525752 (25 bp)
TACCAACTCAGGCAACAAGATGTCC
LOC_Os02g56400
OsAffx.3089.1.S1_at--278--5151Chr02:34525717..34525741 (25 bp)
GCAACAAGATGTCCTGGGTCTGGAA
LOC_Os02g56400
Target Sequence 
TCCTGCTTGATGATAAGTTCAACGCCAAAGTTTCAGATTTTGGAGCATCAAAACTAGCACCAACTGATGAGGCTGAGATT
GCAACATTGGTGCAAGGAACTTGTGGATACTTGGACCCCGAATACCTAATGACATGCCAGCTGACCGATAAGAGTGACGT
ATATAGTTTTGGTGTTGTCGTGCTGGAGCTTCTAACAAGAAAGAAGGCATTATACCTTGACGGACCAGAGGAAGACAGGT
GCCTGGTGTCATGTTTCACCACAGCTGTGAAGGTTGGTCGTCATCAAGAGCTTCTGGACAGCCAAGTAAGGAATGAGCTG
AGTGACGAAATGCTCCAAGAGATTACATACCTCCTAATGAGATGCCTAAGCATGATTGGGGAAGAACGACCGGCGATGAA
AGAGGTAGCTGAGAGGCTGGAATCGCTGAGAAGATATCAGCAGCACCCTTGGGCTAAAGCTGAAGGCAATGAGGAGGAGA
TTCAGAGCTTGCTCGGCATGGAACAAAATAATGCAAATTACCAACTCAGGCAACAAGATGTCCTGGGTCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis