Browse Element(s) Details


OsAffx.12665.1.S1_at

Description tigr:9630.m05599
TID=OsAffx.12665.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5642011/11wall-associated kinase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56390Os.14919.1.S1_at5/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390Os.56216.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390OsAffx.29313.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56400OsAffx.3089.1.S1_at11/112+34525687..34528410Calcium binding EGF domain containing protein
LOC_Os02g56410Os.53217.1.S1_x_at3/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.43567.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.38172.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410OsAffx.26987.1.S1_at1/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56420Os.55685.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.12665.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.28164.2.S1_at3/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56440Os.29925.1.S1_at11/112+34553455..34554303expressed protein
LOC_Os02g56450OsAffx.24893.1.S1_at11/112+34556318..34558297hypothetical protein
LOC_Os02g56460Os.6757.1.S1_at11/112+34558417..34560253NmrA-like family protein, expressed
LOC_Os02g56470OsAffx.3090.1.S1_at10/112+34565267..34567029hypothetical protein
LOC_Os02g56480OsAffx.12666.1.S1_s_at11/112+34568459..34570262PB1 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12665.1.S1_at--1091--6971Chr02:34543849..34543873 (25 bp)
GTACCTAGATCCTGAATACCTAATG
LOC_Os02g56420
OsAffx.12665.1.S1_at--49--9011Chr02:34543861..34543885 (25 bp)
TGAATACCTAATGACTTGCCAACTG
LOC_Os02g56420
OsAffx.12665.1.S1_at--712--5291Chr02:34543945..34543969 (25 bp)
GAAGGCATTGTACTTGGATGGACCA
LOC_Os02g56420
OsAffx.12665.1.S1_at--627--631Chr02:34543993..34544017 (25 bp)
ATGCTTCATCACAGCAGTGAAAGCT
LOC_Os02g56420
OsAffx.12665.1.S1_at--269--5591Chr02:34544069..34544093 (25 bp)
GAAATGCTCACAGAGATTGCACACC
LOC_Os02g56420
OsAffx.12665.1.S1_at--366--3311Chr02:34544077..34544101 (25 bp)
CACAGAGATTGCACACCTCCTGATG
LOC_Os02g56420
OsAffx.12665.1.S1_at--411--6051Chr02:34544173..34544197 (25 bp)
GAGATACCAGCAACATCCTTGGGTT
LOC_Os02g56420
OsAffx.12665.1.S1_at--840--2771Chr02:34544217..34544241 (25 bp)
AAGAGAATCAGAGTTTGCTTGGCAT
LOC_Os02g56420
OsAffx.12665.1.S1_at--209--4931Chr02:34544233..34544257 (25 bp)
GCTTGGCATTGAACAACGGAATTCA
LOC_Os02g56420
OsAffx.12665.1.S1_at--273--8211Chr02:34544250..34544274 (25 bp)
GGAATTCAAATTACCAACTCAAGCA
LOC_Os02g56420
OsAffx.12665.1.S1_at--475--1691Chr02:34544262..34544286 (25 bp)
ACCAACTCAAGCAACATGATGTTCT
LOC_Os02g56420
Target Sequence 
GTACCTAGATCCTGAATACCTAATGACTTGCCAACTGACCGATAAGAGTGACGTTTACAGTTTTGGTGTCGTCGTGCTAG
AGCTTCTAACCAGGAAGAAGGCATTGTACTTGGATGGACCAGAGGAAGACAGGAGTCTGGTGTCATGCTTCATCACAGCA
GTGAAAGCTGGTCGTCATCAAGAGCTTCTGGACAACCAGGTAAGGAATGAGATGAATGAAGAAATGCTCACAGAGATTGC
ACACCTCCTGATGCGATGCCTAAGTATGAACGGGGAAGAACGACCGACGATGAAGGAGGTAGCGGAGAGGCTGGAGATGC
TGAGGAGATACCAGCAACATCCTTGGGTTGAAGCTGAAGGTAATGCCGAAGAGAATCAGAGTTTGCTTGGCATTGAACAA
CGGAATTCAAATTACCAACTCAAGCAACATGATGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis