Browse Element(s) Details


Os.29925.1.S1_at

Description gb:AK109650.1
DB_XREF= gi:32994859
TID=Os.29925.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-A11, full insert sequence.
FL= gb:AK109650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5644011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56410Os.53217.1.S1_x_at3/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.43567.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.38172.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410OsAffx.26987.1.S1_at1/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56420Os.55685.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.12665.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.28164.2.S1_at3/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56440Os.29925.1.S1_at11/112+34553455..34554303expressed protein
LOC_Os02g56450OsAffx.24893.1.S1_at11/112+34556318..34558297hypothetical protein
LOC_Os02g56460Os.6757.1.S1_at11/112+34558417..34560253NmrA-like family protein, expressed
LOC_Os02g56470OsAffx.3090.1.S1_at10/112+34565267..34567029hypothetical protein
LOC_Os02g56480OsAffx.12666.1.S1_s_at11/112+34568459..34570262PB1 domain containing protein, expressed
LOC_Os02g56490Os.15769.1.S1_at11/112+34578332..34579354expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29925.1.S1_at--1009--9511Chr02:34553667..34553691 (25 bp)
TCTCTCCCTGTCTGCTGGATTTGGA
LOC_Os02g56440
Os.29925.1.S1_at--686--8575Chr06:25067393..25067417 (25 bp)
TGGATTTGGATCCTCTACCTTCACG
NONE
Os.29925.1.S1_at--292--3654Chr06:25067411..25067435 (25 bp)
CTTCACGGCTTGAAGGCACGAGCGT
NONE
Os.29925.1.S1_at--563--3754Chr06:25067447..25067471 (25 bp)
CTCATCCACCGTTCAAATAATCCAA
NONE
Os.29925.1.S1_at--322--354Chr06:25067463..25067487 (25 bp)
ATAATCCAATGGCTCACGTCGCCTG
NONE
Os.29925.1.S1_at--584--9334Chr06:25067481..25067505 (25 bp)
TCGCCTGTGCACGTCTGAATGGATA
NONE
Os.29925.1.S1_at--612--6511Chr02:34553543..34553567 (25 bp)
GATATCTGTCTGTCAAAGTCCACGA
LOC_Os02g56440
Os.29925.1.S1_at--979--9691Chr02:34553531..34553555 (25 bp)
TCAAAGTCCACGAAGCACTACTGCT
LOC_Os02g56440
Os.29925.1.S1_at--220--5113Chr06:25067528..25067552 (25 bp)
GCACTACTGCTATATTTCAGTCCGA
NONE
Os.29925.1.S1_at--249--10534Chr06:25067543..25067567 (25 bp)
TTCAGTCCGAATACCAATGATGTTT
NONE
Os.29925.1.S1_at--217--10394Chr06:25067587..25067611 (25 bp)
TTTTCTTATCAATCCTATGCTCTAA
NONE
Target Sequence 
TCTCTCCCTGTCTGCTGGATTTGGATCCTCTACCTTCACGGCTTGAAGGCACGAGCGTGCAGTCGGCACCTCATCCACCG
TTCAAATAATCCAATGGCTCACGTCGCCTGTGCACGTCTGAATGGATATCTGTCTGTCAAAGTCCACGAAGCACTACTGC
TATATTTCAGTCCGAATACCAATGATGTTTGCATTATAAATTTTGTAATTTTTCTTATCAATCCTATGCTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis