Browse Element(s) Details


Os.6757.1.S1_at

Description gb:AK064401.1
DB_XREF= gi:32974419
TID=Os.6757.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-108-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H04, full insert sequence.
FL= gb:AK064401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5646011/11NmrA-like family protein, expressed
LOC_Os02g566801/11NmrA-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56410Os.53217.1.S1_x_at3/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.43567.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.38172.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410OsAffx.26987.1.S1_at1/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56420Os.55685.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.12665.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.28164.2.S1_at3/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56440Os.29925.1.S1_at11/112+34553455..34554303expressed protein
LOC_Os02g56450OsAffx.24893.1.S1_at11/112+34556318..34558297hypothetical protein
LOC_Os02g56460Os.6757.1.S1_at11/112+34558417..34560253NmrA-like family protein, expressed
LOC_Os02g56470OsAffx.3090.1.S1_at10/112+34565267..34567029hypothetical protein
LOC_Os02g56480OsAffx.12666.1.S1_s_at11/112+34568459..34570262PB1 domain containing protein, expressed
LOC_Os02g56490Os.15769.1.S1_at11/112+34578332..34579354expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6757.1.S1_at--441--9071Chr02:34559016..34559040 (25 bp)
TGCTCAGGGAGCTCTTCCCACGGTA
LOC_Os02g56460
Os.6757.1.S1_at--968--2751Chr02:34558772..34558796 (25 bp)
AAGAGTTTGAATGAGGCGGTCCTAT
LOC_Os02g56460
Os.6757.1.S1_at--156--911Chr02:34558759..34558783 (25 bp)
AGGCGGTCCTATGCATGCAGCAGAA
LOC_Os02g56460
Os.6757.1.S1_at--1038--1451Chr02:34558738..34558762 (25 bp)
AGAAGGGTCACCTGCCTCTGATTTA
LOC_Os02g56460
Os.6757.1.S1_at--456--6532Chr02:34738070..34738094 (25 bp)
GATTTATCCCGTTCCAAAACGTGCT
LOC_Os02g56680
Os.6757.1.S1_at--469--3151Chr02:34558667..34558691 (25 bp)
AATTCGTCTGTTGCGATGGGAAACA
LOC_Os02g56460
Os.6757.1.S1_at--92--2931Chr02:34558611..34558635 (25 bp)
AAGGAAACACAAGGGCTCTGAGATT
LOC_Os02g56460
Os.6757.1.S1_at--185--8331Chr02:34558598..34558622 (25 bp)
GGCTCTGAGATTGTTTATTTGTGCA
LOC_Os02g56460
Os.6757.1.S1_at--1017--271Chr02:34558483..34558507 (25 bp)
ATATGGCCTTCATTTGTATTCTGGG
LOC_Os02g56460
Os.6757.1.S1_at--452--8771Chr02:34558469..34558493 (25 bp)
TGTATTCTGGGCTTCAGGATGTAAA
LOC_Os02g56460
Os.6757.1.S1_at--454--10571Chr02:34558422..34558446 (25 bp)
TTCTATGTTGCAGGGAATTTCCGAG
LOC_Os02g56460
Target Sequence 
TGCTCAGGGAGCTCTTCCCACGGTACCCTGCCACTGCAAAGTGTGAGGATGATGGGAAGCCGATGGCGAAGCCGTATAAG
TTCTCGAACCAGAGGCTCAAGGATTTGGGTTTGGAGTTCACTCCACTGAGGAAGAGTTTGAATGAGGCGGTCCTATGCAT
GCAGCAGAAGGGTCACCTGCCTCTGATTTATCCCGTTCCAAAACGTGCTTACCTATAAAATCAAGATAAAAATACGAATT
CGTCTGTTGCGATGGGAAACAGAGAGCAACAGGGAAAAAACAAAGGAAAAAAAAGGAAACACAAGGGCTCTGAGATTGTT
TATTTGTGCAAGTGTAGTAGGCATTTATATTTTGTTCTTACACATGTAAANCCCTTCTGTAATGAACAATAAGGTCCCAT
GGAGGGAACGGCAAATGCAAATATGGCCTTCATTTGTATTCTGGGCTTCAGGATGTAAATTTGAATATCATTGTATTTAT
TTTCTATGTTGCAGGGAATTTCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis