Browse Element(s) Details


OsAffx.12666.1.S1_s_at

Description tigr:9630.m05605
TID=OsAffx.12666.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PB1 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5648011/11PB1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56420Os.55685.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.12665.1.S1_at11/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56420OsAffx.28164.2.S1_at3/112+34539408..34547739wall-associated kinase 3, putative, expressed
LOC_Os02g56440Os.29925.1.S1_at11/112+34553455..34554303expressed protein
LOC_Os02g56450OsAffx.24893.1.S1_at11/112+34556318..34558297hypothetical protein
LOC_Os02g56460Os.6757.1.S1_at11/112+34558417..34560253NmrA-like family protein, expressed
LOC_Os02g56470OsAffx.3090.1.S1_at10/112+34565267..34567029hypothetical protein
LOC_Os02g56480OsAffx.12666.1.S1_s_at11/112+34568459..34570262PB1 domain containing protein, expressed
LOC_Os02g56490Os.15769.1.S1_at11/112+34578332..34579354expressed protein
LOC_Os02g56500OsAffx.12667.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_at10/112+34590769..34594118expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12666.1.S1_s_at--531--8511Chr02:34568934..34568958 (25 bp)
TGGCAATGCCAATGCGAGCGGCAAT
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--954--4011Chr02:34568857..34568881 (25 bp)
CGTATGACAGCAATGGCCACGCCAT
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--872--4171Chr02:34568812..34568836 (25 bp)
CCCAGTATGCTTCGGCTGTCAGCGG
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--634--2651Chr02:34568747..34568771 (25 bp)
AAGCCGGTGGCGGTGAAACCAACAG
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--491--2491Chr02:34568727..34568751 (25 bp)
AACAGTTTCCTGAGCAGCATGCCAG
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--889--5051Chr02:34568714..34568738 (25 bp)
GCAGCATGCCAGTATCTTAACCTCG
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--448--2791Chr02:34568664..34568688 (25 bp)
AAGAGTTTGGCAATTTTCTCTGTCT
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--113--10591Chr02:34568649..34568673 (25 bp)
TTCTCTGTCTAGTCCGTCAATATGC
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--537--6071Chr02:34568546..34568570 (25 bp)
GAGTTTTGGTTTTGGCCTTCATGAT
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--566--8431Chr02:34568533..34568557 (25 bp)
GGCCTTCATGATATGCGACTAGAGT
LOC_Os02g56480
OsAffx.12666.1.S1_s_at--14--5711Chr02:34568517..34568541 (25 bp)
GACTAGAGTTCTTGGTGTGCTTAGA
LOC_Os02g56480
Target Sequence 
TGGCAATGCCAATGCGAGCGGCAATGGCCCTTCCCCCGCCGCCGCGTCGAATGCTCAGGCCTACGCGCCGCAGGTGGCGT
ATGACAGCAATGGCCACGCCATCTACTACACCAGCGTCCTCCCCCAGTATGCTTCGGCTGTCAGCGGCGTGCCGGCGGCG
GCCACCGTGCTCGGCACTGACCCAGCCAAGCCGGTGGCGGTGAAACCAACAGTTTCCTGAGCAGCATGCCAGTATCTTAA
CCTCGCCGCCGATGGGTTAAAAAACTAAAAAAGAGTTTGGCAATTTTCTCTGTCTAGTCCGTCAATATGCGTTAATATGT
CAGTTGGATTCGTTATTGTCTCTAGTATTTACCTATAATATTCTTTTTCTCTCTCTCTCTTTTGTTTAGAGTTTTGGTTT
TGGCCTTCATGATATGCGACTAGAGTTCTTGGTGTGCTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12666.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis