Browse Element(s) Details


OsAffx.12667.1.S1_x_at

Description tigr:9630.m05606
TID=OsAffx.12667.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5650011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56470OsAffx.3090.1.S1_at10/112+34565267..34567029hypothetical protein
LOC_Os02g56480OsAffx.12666.1.S1_s_at11/112+34568459..34570262PB1 domain containing protein, expressed
LOC_Os02g56490Os.15769.1.S1_at11/112+34578332..34579354expressed protein
LOC_Os02g56500OsAffx.12667.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_at10/112+34590769..34594118expressed protein
LOC_Os02g56510Os.6567.1.S1_at11/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56510Os.51613.1.S1_x_at2/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56520OsAffx.24894.1.S1_at11/112+34609408..34612854peroxisomal membrane protein, putative, expressed
LOC_Os02g56530Os.47757.1.A1_at11/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56530Os.27744.1.S1_at10/112+34613990..34617796KE03 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12667.1.S1_x_at--472--811Chr02:34592980..34593099 (25 bp)
ATGGTGGATTGCACAGGCCCTGAGA
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--1012--6151Chr02:34593108..34593132 (25 bp)
GAGGTTCCAGTCAGAGTACATGTGC
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--826--8951Chr02:34593192..34593216 (25 bp)
TGAAAATGTCCCAGATCCACCAAAG
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--610--5251Chr02:34593374..34593398 (25 bp)
GAATCTGACATTGAGCGACTTGTGT
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--526--4731Chr02:34593406..34593430 (25 bp)
GCATAAACCATATATACCCGGGCCT
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--684--4251Chr02:34593423..34593446 (24 bp)
CCGGGCCTCTTATCAGTATGCATGA
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--403--1811Chr02:34593725..34593749 (25 bp)
ACGCGCCAAGATGTCAATGTGAGCA
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--434--7551Chr02:34593772..34593796 (25 bp)
GGGCCGTGAGACCAGCACAAACTAT
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--702--2391Chr02:34593790..34593814 (25 bp)
AAACTATCCCCTTGTCAATTTCATC
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--1132--1251Chr02:34593829..34593853 (25 bp)
AGATTTCTTCATTGGAGCCCTGGGA
LOC_Os02g56500
OsAffx.12667.1.S1_x_at--882--8631Chr02:34593849..34593873 (25 bp)
TGGGATCAACCTGGTGCTACCTCAT
LOC_Os02g56500
Target Sequence 
ATGGTGGATTGCACAGGCCCTGAGATACCTAATGAGGTTCCAGTCAGAGTACATGTGCAGATTACTGAATGTGGCTAGAC
ATTCAGCATTTGGCATGCAGGCAGCAAAGATGGTTCTTGAAAATGTCCCAGATCCACCAAAGCCTAGCATTAGCAGAACA
GAATCTGACATTGAGCGACTTGTGTGGTCGGAGCATAAACCATATATACCCGGGCCTCTTATCAGTATGCATGAAGTTAT
CGACGAAACAAAATTATATCCCAAATGGAATTTCTATTTCACAAATGTGACGCGCCAAGATGTCAATGTGAGCATGGCAA
TGTATGAGGCCAGCCTGGGCCGTGAGACCAGCACAAACTATCCCCTTGTCAATTTCATCATGGCCACTGAAGCAGATTTC
TTCATTGGAGCCCTGGGATCAACCTGGTGCTACCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12667.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis