Browse Element(s) Details


Os.47757.1.A1_at

Description gb:AK060586.1
DB_XREF= gi:32970604
TID=Os.47757.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B03, full insert sequence.
FL= gb:AK060586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5653011/11KE03 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56500OsAffx.12667.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_x_at11/112+34590769..34594118expressed protein
LOC_Os02g56500Os.24688.1.S1_at10/112+34590769..34594118expressed protein
LOC_Os02g56510Os.6567.1.S1_at11/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56510Os.51613.1.S1_x_at2/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56520OsAffx.24894.1.S1_at11/112+34609408..34612854peroxisomal membrane protein, putative, expressed
LOC_Os02g56530Os.47757.1.A1_at11/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56530Os.27744.1.S1_at10/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed
LOC_Os02g56560Os.12673.1.S1_at11/112+34639003..34643257Casein kinase I, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47757.1.A1_at--193--771Chr02:34614231..34614255 (25 bp)
ATGTGCTCTGGAGAACGCGTAGTTG
LOC_Os02g56530
Os.47757.1.A1_at--764--1831Chr02:34614217..34614241 (25 bp)
ACGCGTAGTTGATTGGATCTCCTCG
LOC_Os02g56530
Os.47757.1.A1_at--489--7971Chr02:34614203..34614227 (25 bp)
GGATCTCCTCGAGGAAGTACAGGAT
LOC_Os02g56530
Os.47757.1.A1_at--686--7011Chr02:34614187..34614211 (25 bp)
GTACAGGATGGCTATATACCCCGCT
LOC_Os02g56530
Os.47757.1.A1_at--744--311Chr02:34614172..34614196 (25 bp)
ATACCCCGCTAATCTGTAATTCAAT
LOC_Os02g56530
Os.47757.1.A1_at--208--10331Chr02:34614127..34614151 (25 bp)
TTTCTTCTTCCAGCTGGATGTATGT
LOC_Os02g56530
Os.47757.1.A1_at--14--6491Chr02:34614088..34614112 (25 bp)
GATACGGCCCTGTTGTTGTTAAAGA
LOC_Os02g56530
Os.47757.1.A1_at--354--7571Chr02:34614050..34614074 (25 bp)
GGGCTTTTTAGCTGTAGCACTTCCC
LOC_Os02g56530
Os.47757.1.A1_at--374--4431Chr02:34614024..34614048 (25 bp)
TCCTGTTGTACGAAAACCCTCGAAT
LOC_Os02g56530
Os.47757.1.A1_at--371--5531Chr02:34614013..34614037 (25 bp)
GAAAACCCTCGAATCTGGCAGTGAT
LOC_Os02g56530
Os.47757.1.A1_at--553--3911Chr02:34613999..34614023 (25 bp)
CTGGCAGTGATTTTCTCGCAAAGAG
LOC_Os02g56530
Target Sequence 
ATGTGCTCTGGAGAACGCGTAGTTGATTGGATCTCCTCGAGGAAGTACAGGATGGCTATATACCCCGCTAATCTGTAATT
CAATTCTATTTTTTGCCCCCNTTNTTTTCTTCTTCCAGCTGGATGTATGTTTGATGNTCATGATGATACGGCCCTGTTGT
TGTTAAAGATGTGTTTTGTGGGGGGCTTTTTAGCTGTAGCACTTCCCCTCCTGTTGTACGAAAACCCTCGAATCTGGCAG
TGATTTTCTCGCAAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47757.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis