Browse Element(s) Details


Os.7967.1.S1_at

Description gb:AK059635.1
DB_XREF= gi:32969653
TID=Os.7967.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A08, full insert sequence.
FL= gb:AK059635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5654011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56510Os.6567.1.S1_at11/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56510Os.51613.1.S1_x_at2/112+34603539..34609180Phosphate transporter 1, putative, expressed
LOC_Os02g56520OsAffx.24894.1.S1_at11/112+34609408..34612854peroxisomal membrane protein, putative, expressed
LOC_Os02g56530Os.47757.1.A1_at11/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56530Os.27744.1.S1_at10/112+34613990..34617796KE03 protein, putative, expressed
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed
LOC_Os02g56560Os.12673.1.S1_at11/112+34639003..34643257Casein kinase I, putative, expressed
LOC_Os02g56570Os.50737.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570Os.50736.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570OsAffx.7999.1.S1_at1/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56580OsAffx.12668.1.S1_at11/112+34654229..34655050P21-Rho-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7967.1.S1_at--872--1291Chr02:34630369..34630393 (25 bp)
AGATGCCGTTCAGCCCACTGGAGAG
LOC_Os02g56540
Os.7967.1.S1_at--922--5991Chr02:34630389..34630413 (25 bp)
GAGAGCAAGCTCAATTCGGCACTGA
LOC_Os02g56540
Os.7967.1.S1_at--193--5311Chr02:34630442..34630466 (25 bp)
GAAGGTCAACCCAATGAGCCCTAAC
LOC_Os02g56540
Os.7967.1.S1_at--787--2531Chr02:34630464..34630488 (25 bp)
AACTACATCCGTGAGCTCAGAGCTT
LOC_Os02g56540
Os.7967.1.S1_at--1110--1351Chr02:34630482..34630506 (25 bp)
AGAGCTTGAGCTCTTCCAACCTGAA
LOC_Os02g56540
Os.7967.1.S1_at--843--7531Chr02:34630542..34630566 (25 bp)
GTGGCATTTCAACGGTGGCAACGAT
LOC_Os02g56540
Os.7967.1.S1_at--420--10431Chr02:34630577..34630601 (25 bp)
TTATCTATAGTCTGGCTCTGTTCTG
LOC_Os02g56540
Os.7967.1.S1_at--149--8331Chr02:34630590..34630614 (25 bp)
GGCTCTGTTCTGTCTGTAAATTTGC
LOC_Os02g56540
Os.7967.1.S1_at--1159--4851Chr02:34630613..34630637 (25 bp)
GCTAGCTATAGGCTGGTTCTGCAAA
LOC_Os02g56540
Os.7967.1.S1_at--813--3891Chr02:34630674..34630698 (25 bp)
CTGTGGCTAGACACTGCGGGTCATG
LOC_Os02g56540
Os.7967.1.S1_at--840--7691Chr02:34630691..34630715 (25 bp)
GGGTCATGCGTCTGTGGCCAACAAG
LOC_Os02g56540
Target Sequence 
AGATGCCGTTCAGCCCACTGGAGAGCAAGCTCAATTCGGCACTGAACGACGTGCACCTCGCCGCCCTCTCGCCGAAGGTC
AACCCAATGAGCCCTAACTACATCCGTGAGCTCAGAGCTTGAGCTCTTCCAACCTGAAGAAGATCGGTTAGATCTTTCGN
AGGTTTGTCGCCGGTGGCATTTCAACGGTGGCAACGATGTATCATCATTTATCTATAGTCTGGCTCTGTTCTGTCTGTAA
ATTTGCTAGCTATAGGCTGGTTCTGCAAACCTAAACTCTGAAGTGTAACCATGTTACACGAGTGGCTGTGGCTAGACACT
GCGGGTCATGCGTCTGTGGCCAACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis