Browse Element(s) Details


Os.50736.1.S1_at

Description gb:AY220667.1
DB_XREF= gi:29292981
TID=Os.50736.1
CNT=1
FEA=RNA
TIER=ConsEnd
STK=0
UG=Os.50736 (NCBI UniGene Cluster)
UG_TITLE=Box CD snoRNA J35.1, complete sequence
DEF=Oryza sativa box CD snoRNA J35.1, complete sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5657011/11RabGAP/TBC domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56540Os.7967.1.S1_at11/112+34626439..34630743Kinesin motor domain containing protein, expressed
LOC_Os02g56550Os.18740.1.S1_at10/112+34632017..34635209ABC transporter family protein, expressed
LOC_Os02g56560Os.12673.1.S1_at11/112+34639003..34643257Casein kinase I, putative, expressed
LOC_Os02g56570Os.50737.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570Os.50736.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570OsAffx.7999.1.S1_at1/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56580OsAffx.12668.1.S1_at11/112+34654229..34655050P21-Rho-binding domain containing protein
LOC_Os02g56590OsAffx.24896.1.S1_at11/112+34661647..34664054hypothetical protein
LOC_Os02g56600Os.51120.1.S1_at11/112+34667123..34670444NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50736.1.S1_at--984--10772Chr05:2204740..2204764 (25 bp)
TTGATTATGAAGTGCATTGACTCGT
NONE
Os.50736.1.S1_at--203--10132Chr05:2204745..2204769 (25 bp)
TATGAAGTGCATTGACTCGTTGTGT
NONE
Os.50736.1.S1_at--393--5332Chr05:2204748..2204772 (25 bp)
GAAGTGCATTGACTCGTTGTGTGCT
NONE
Os.50736.1.S1_at--350--1132Chr05:2204750..2204774 (25 bp)
AGTGCATTGACTCGTTGTGTGCTGT
NONE
Os.50736.1.S1_at--189--4952Chr05:2204753..2204777 (25 bp)
GCATTGACTCGTTGTGTGCTGTTTC
NONE
Os.50736.1.S1_at--749--52Chr05:2204755..2204779 (25 bp)
ATTGACTCGTTGTGTGCTGTTTCCT
NONE
Os.50736.1.S1_at--356--8931Chr02:34649101..34649125 (25 bp)
TGACTCGTTGTGTGCTGTTTCCTCT
LOC_Os02g56570
Os.50736.1.S1_at--654--1992Chr05:2204759..2204779 (21 bp)
ACTCGTTGTGTGCTGTTTCCTCTTC
NONE
Os.50736.1.S1_at--435--3792Chr05:2204760..2204779 (20 bp)
CTCGTTGTGTGCTGTTTCCTCTTCC
NONE
Os.50736.1.S1_at--844--10671Chr02:34649119..34649143 (25 bp)
TTCCTCTTCCTTTTGGCAGCCTGGC
LOC_Os02g56570
Os.50736.1.S1_at--879--9572Chr05:2204784..2204803 (20 bp)
TCTTCCTTTTGGCAGCCTGGCCTCA
NONE
Target Sequence 
TTGATTATGAAGTGCATTGACTCGTTGTGTGCTGTTTCCTCTTCCTTTTGGCAGCCTGGCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis