Browse Element(s) Details


Os.51120.1.S1_at

Description gb:AK070982.1
DB_XREF= gi:32981005
TID=Os.51120.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075A01, full insert sequence.
FL= gb:AK070982.1 gb:AK060976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5660011/11NAC-domain containing protein 21/22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56560Os.12673.1.S1_at11/112+34639003..34643257Casein kinase I, putative, expressed
LOC_Os02g56570Os.50737.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570Os.50736.1.S1_at11/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56570OsAffx.7999.1.S1_at1/112+34648356..34652905RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os02g56580OsAffx.12668.1.S1_at11/112+34654229..34655050P21-Rho-binding domain containing protein
LOC_Os02g56590OsAffx.24896.1.S1_at11/112+34661647..34664054hypothetical protein
LOC_Os02g56600Os.51120.1.S1_at11/112+34667123..34670444NAC-domain containing protein 21/22, putative, expressed
LOC_Os02g56610Os.57394.1.S1_at11/112+34681755..34683854expressed protein
LOC_Os02g56620OsAffx.12669.1.S1_at10/112+34691165..34693845hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009734biological_processauxin mediated signaling pathway
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51120.1.S1_at--672--1711Chr02:34669969..34669993 (25 bp)
ACCAGCATGGCGCTGTACAGCAGCA
LOC_Os02g56600
Os.51120.1.S1_at--1033--1531Chr02:34669990..34670014 (25 bp)
AGCATCTTCGACTTCAGCCAGCATC
LOC_Os02g56600
Os.51120.1.S1_at--306--8431Chr02:34670125..34670149 (25 bp)
GGCCTGATGCCGATGTGACGATCCA
LOC_Os02g56600
Os.51120.1.S1_at--175--1891Chr02:34670142..34670166 (25 bp)
ACGATCCACCATAGGTGTCGGTGCT
LOC_Os02g56600
Os.51120.1.S1_at--722--5071Chr02:34670225..34670249 (25 bp)
GCAGCGCAGCTAGCTAGCGTTTATT
LOC_Os02g56600
Os.51120.1.S1_at--540--3091Chr02:34670253..34670277 (25 bp)
AATAACCTCTTTTCACCTCGATTGT
LOC_Os02g56600
Os.51120.1.S1_at--934--6811Chr02:34670290..34670314 (25 bp)
GTTTCGTGGTGATCGATTCCATCGA
LOC_Os02g56600
Os.51120.1.S1_at--1128--6571Chr02:34670304..34670328 (25 bp)
GATTCCATCGATCAGCTTGTGCAGA
LOC_Os02g56600
Os.51120.1.S1_at--970--3431Chr02:34670325..34670349 (25 bp)
CAGATTTCGTTGATTGTGCATGCAA
LOC_Os02g56600
Os.51120.1.S1_at--114--4991Chr02:34670342..34670366 (25 bp)
GCATGCAAACATGCGCACCTGTGTA
LOC_Os02g56600
Os.51120.1.S1_at--976--6991Chr02:34670379..34670403 (25 bp)
GTACGTCGTATAGCGCTGTTGCATT
LOC_Os02g56600
Target Sequence 
ACCAGCATGGCGCTGTACAGCAGCATCTTCGACTTCAGCCAGCATCTCGACGGCGGCGCCGTGGCGGCGTCGGCGTCGGC
GGCGGGATCGAGGGTCGACGGCGGCGAGCAGTGCGGTCTGATGGAGCTAGGGCTCGAGGAGCACTACAANTACAACGGCC
TGATGCCGATGTGACGATCCACCATAGGTGTCGGTGCTGCTAGTGCTAGCTTAGCTAGCTTACACACACNCCCAGCTGCT
AGCTAGCTGCAGTTCTGCAGCGCAGCTAGCTAGCGTTTATTATTAATAACCTCTTTTCACCTCGATTGTTTGATCTGATT
TGTTTCGTGGTGATCGATTCCATCGATCAGCTTGTGCAGATTTCGTTGATTGTGCATGCAAACATGCGCACCTGTGTATA
GGGTATAGTGGTACGTCGTATAGCGCTGTTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis