Browse Element(s) Details


Os.57394.1.S1_at

Description gb:AK111446.1
DB_XREF= gi:32996655
TID=Os.57394.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B03, full insert sequence.
FL= gb:AK111446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5661011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56590OsAffx.24896.1.S1_at11/112+34661647..34664054hypothetical protein
LOC_Os02g56600Os.51120.1.S1_at11/112+34667123..34670444NAC-domain containing protein 21/22, putative, expressed
LOC_Os02g56610Os.57394.1.S1_at11/112+34681755..34683854expressed protein
LOC_Os02g56620OsAffx.12669.1.S1_at10/112+34691165..34693845hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57394.1.S1_at--573--5031Chr02:34682502..34682526 (25 bp)
GCAGTTCATCATCCCGTGAGTTCTT
LOC_Os02g56610
Os.57394.1.S1_at--1041--3531Chr02:34682462..34682486 (25 bp)
CATCTCCGCATCTCCATTGATCGAT
LOC_Os02g56610
Os.57394.1.S1_at--508--6391Chr02:34682444..34682468 (25 bp)
GATCGATCGAGCCTCGCAGCAAGAA
LOC_Os02g56610
Os.57394.1.S1_at--1039--5591Chr02:34682422..34682446 (25 bp)
GAAATTCCAATCTCCTTGGCAGAAA
LOC_Os02g56610
Os.57394.1.S1_at--595--1411Chr02:34682402..34682426 (25 bp)
AGAAATGCCATCTTGCTTTGCCAGT
LOC_Os02g56610
Os.57394.1.S1_at--842--2931Chr02:34682375..34682399 (25 bp)
AAGGCATCATATCTCTTCTTTCCTC
LOC_Os02g56610
Os.57394.1.S1_at--580--10651Chr02:34682356..34682380 (25 bp)
TTCCTCCTGAATTGGTTTCGATCTC
LOC_Os02g56610
Os.57394.1.S1_at--345--9391Chr02:34682339..34682363 (25 bp)
TCGATCTCTCCCATTTTGCAAAAAA
LOC_Os02g56610
Os.57394.1.S1_at--647--9491Chr02:34682309..34682333 (25 bp)
TCTCCTCTTTTTAATTTCATCTCTG
LOC_Os02g56610
Os.57394.1.S1_at--160--471Chr02:34682291..34682315 (25 bp)
ATCTCTGTCTCGCTTTCTAAGCTAG
LOC_Os02g56610
Os.57394.1.S1_at--606--10431Chr02:34681790..34681814 (25 bp)
TTATGTGTACTTGTCCTGGGAACAG
LOC_Os02g56610
Target Sequence 
GCAGTTCATCATCCCGTGAGTTCTTCTCGATCCCCATCGCCATCTCCGCATCTCCATTGATCGATCGAGCCTCGCAGCAA
GAAATTCCAATCTCCTTGGCAGAAATGCCATCTTGCTTTGCCAGTACAAGGCATCATATCTCTTCTTTCCTCCTGAATTG
GTTTCGATCTCTCCCATTTTGCAAAAAAAAGATTTCTCCTCTTTTTAATTTCATCTCTGTCTCGCTTTCTAAGCTAGGAC
GAAGGTCATGCATGAGTGATTTCAATTGGTAGCTTAATTAAGACAGAAACAACATGTGTTATGTGTACTTGTCCTGGGAA
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis